Skip to content

Track infeasible error #125

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
7 tasks
niinina opened this issue Jun 4, 2024 · 1 comment
Open
7 tasks

Track infeasible error #125

niinina opened this issue Jun 4, 2024 · 1 comment
Labels
question Further information is requested

Comments

@niinina
Copy link
Contributor

niinina commented Jun 4, 2024

Some of the growth functions throw an error or warning, if the chosen bounds cannot be used to successfully solce the equation system.

infeasible error

  • get_secretion

just a UserWarning

  • get_metabs_essential_for_growth_wrapper
  • growth_sim_single
  • growth_sim_multi
  • growth_analysis
  • get_essential_reactions_via_single_knockout
  • test_growth_with_source

Should the error be catched, in case multiple tests are run back to back?
Should the warning be reported in some other way?

@niinina niinina added bug Something isn't working and removed bug Something isn't working labels Jun 4, 2024
@GwennyGit GwennyGit added the bug Something isn't working label Feb 28, 2025
@cb-Hades
Copy link
Collaborator

cb-Hades commented Mar 3, 2025

Currently, issue does not occur with the test models. A model / testcase, that replicates the error, would be useful @niinina

=> after re-examination, the "error" was traced to the bounds being set to unreasonable values with another function during testing

@cb-Hades cb-Hades added question Further information is requested and removed bug Something isn't working labels Mar 4, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
question Further information is requested
Projects
None yet
Development

No branches or pull requests

3 participants