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fixed a typo with logging #155
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src/refinegems/utility/io.py

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Original file line numberDiff line numberDiff line change
@@ -672,7 +672,7 @@ def mimic_genbank_fasta(annot_genome:Union[str,Path], gff_path:Union[str,Path],
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elif len(matched_locus)>1:
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locus = matched_locus.iloc[0,0]
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mes = f"Ambiguous mapping for protein ID {seq.id}. Keeping locus tag {locus}.\nList all mappings: {matched_locus['locus_tag']}"
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logging.info(mes)
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logger.info(mes)
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# no match found (prob. missing annotation)
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else:
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pass

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