DXJava is compatible with Java 7 and higher.
Examples of DNAnexus Platform apps written in Java
- Maven
apt-get install maven# if you don't have openjdk installed maven installation will install the latest version
brew install maven
# if you already have one jdk and don't want to have multiple versions
brew install --ignore-dependencies maven
# if Java was installed with brew check that symlink is correct, e.g. for openjdk@11
sudo ln -sfn /opt/homebrew/opt/openjdk@11/libexec/openjdk.jdk /Library/Java/JavaVirtualMachines/openjdk-11.jdk
# verify with
java -version
# Make sure you have JAVA_HOME set for Maven
export JAVA_HOME=$(/usr/libexec/java_home -V)From dx-toolkit, run:
make java
To create a project for Eclipse development:
cd src/java; mvn eclipse:eclipse
Ensure you have logged in to the platform with a valid token (for example,
using dx login). Then:
cd src/java; mvn test
In order to run a particular test class or method, use the test option, for example:
mvn test -Dtest=DXSearchTest
or
mvn test -Dtest=DXSearchTest#testFindDataObjects