Update for the 0.3.11 release. Easier installation

Author: ctSkennerton

AUTHORS

@@ -1,2 +1,2 @@
 Connor Skennerton
-Michael Imelfort
+Michael Imelfort

INSTALL

@@ -1,57 +0,0 @@
-INSTALLATION
-------------
-
-Crass requires a UNIX operating system and has been tested on 64-bit Linux 
-personal computers with intel processors and servers with 64-bit Opteron processors.
-It successfully compiles with gcc 4.4.5 and gcc 4.6.3 other versions of gcc have not been tested.  
-Crass uses [libcrispr](https://ctskennerton.github.com/libcrispr) release 1:0:0 which requires 
-[Xerces-c](http://xerces.apache.org/) XML libraryversion 3.1.1 and [Zlib](www.zlib.net) 
-are installed for compilation.  Optionally you can also install the [Graphviz package](www.graphviz.org) 
-for rendering graphs.  
-
-WARNING: Do not install the binary distribution of Xerces from their
-website, it is broken and looks for other shared libraries in specific
-places.  Install xerces from source or using a package manager for you
-system.
-
-With all this in mind to perform the installation:
-
-download the source files from git.
-then on most Unix systems:
-
-    $ tar -xf crass.tar.gz
-    $ cd crass
-    $ ./autogen.sh
-    $ ./configure
-    $ make
-    $ make install
-
-On some installations you may need to update the `LD_LIBRARY_PATH`
-environmental variable so that crass can find the libcrispr shared
-library.  This is essential if you have libcrispr in a non-standard
-location, although I've also noticed this in the latest versions of
-Ubuntu (12.10) that `/usr/local/lib` is not included in
-`LD_LIBRARY_PATH` by default so even a 'standard' installation may
-require this.
-
-NON-STANDARD INSTALLATIONS
---------------------------
-
-Crass can access the graphviz libraies and executables if desired. Use the 
-`--enable-rendering` during configure to access this feature.
-
-If libcrispr or Xerces are installed in non-standard loacations use the `--with-libcrispr=[PREFIX]`
-and  `--with-xerces=[PREFIX]` configure option to change the location prefix. Configure will look for 
-`$prefix/lib/` and `$prefix/include` directories for the library objects and header files.  Note that the 
-below options for changing `LDFLAGS` and `CPPFLAGS` will not work for Xerces as it is a C++ library and not a 
-C library and therefore different code is used to check for it.   
-
-`LDFLAGS` - set this environmental variable during configure to add to the path where library object files can be found. 
-Don't forget to use `-L` a the begining
-
-`CPPFLAGS` - set this environmental variable during configure to add to the path where header files are located.
-
-example:
-
-    $ ./configure --enable-rendering LDFLAGS="-L/usr/home/user_name/local/lib/" CPPFLAGS="-I/usr/home/user_name/local/include/" 
-

README.md

@@ -1,4 +1,4 @@
-crass -- CRisprASSembler -- version 0 subversion 3 revision 10 (0.3.10)
+crass -- CRisprASSembler -- version 0 subversion 3 revision 11 (0.3.11)
 =======================================================================
 
 CITATION
@@ -53,9 +53,8 @@ INSTALLATION
 Crass requires a UNIX operating system and has been tested on 64-bit Linux 
 personal computers with intel processors and servers with 64-bit Opteron processors.
 It successfully compiles with gcc 4.4.5 and gcc 4.6.3 other versions of gcc have not been tested.  
-Crass uses [libcrispr](https://ctskennerton.github.com/libcrispr) release 1:0:0 which requires 
-[Xerces-c](http://xerces.apache.org/) XML libraryversion 3.1.1 and [Zlib](www.zlib.net) 
-are installed for compilation.  Optionally you can also install the [Graphviz package](www.graphviz.org) 
+Crass requires [Xerces-c](http://xerces.apache.org/) version 3.1.1 and [Zlib](www.zlib.net) 
+to be installed for compilation.  Optionally you can also install the [Graphviz package](www.graphviz.org) 
 for rendering graphs.  
 
 WARNING: Do not install the binary distribution of Xerces from their
@@ -75,22 +74,15 @@ then on most Unix systems:
     $ make
     $ make install
 
-On some installations you may need to update the `LD_LIBRARY_PATH`
-environmental variable so that crass can find the libcrispr shared
-library.  This is essential if you have libcrispr in a non-standard
-location, although I've also noticed this in the latest versions of
-Ubuntu (12.10) that `/usr/local/lib` is not included in
-`LD_LIBRARY_PATH` by default so even a 'standard' installation may
-require this.
 
 NON-STANDARD INSTALLATIONS
 --------------------------
 
 Crass can access the graphviz libraies and executables if desired. Use the 
 `--enable-rendering` during configure to access this feature.
 
-If libcrispr or Xerces are installed in non-standard loacations use the `--with-libcrispr=[PREFIX]`
-and  `--with-xerces=[PREFIX]` configure option to change the location prefix. Configure will look for 
+If Xerces is installed in a non-standard loacation use the 
+`--with-xerces=[PREFIX]` configure option to change the location prefix. Configure will look for 
 `$prefix/lib/` and `$prefix/include` directories for the library objects and header files.  Note that the 
 below options for changing `LDFLAGS` and `CPPFLAGS` will not work for Xerces as it is a C++ library and not a 
 C library and therefore different code is used to check for it.   

configure.ac

@@ -2,7 +2,7 @@
 # Process this file with autoconf to produce a configure script.
 
 AC_PREREQ(2.61)
-AC_INIT(crass, 0.3.10, [email protected])
+AC_INIT(crass, 0.3.11, [email protected])
 
 AC_CONFIG_AUX_DIR(build)
 AC_CONFIG_MACRO_DIR([m4])