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Error in CountsToCPM(bulk.eset) : Zero expression in selected genes for 1 cells #43

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JJJelly77 opened this issue Jul 22, 2024 · 1 comment

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@JJJelly77
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hello, I really want to know what caused this, looking forward to your reply

i used this code :
res <- BisqueRNA::ReferenceBasedDecomposition(bulk.eset, sc.eset, use.overlap=FALSE)

the error is:

Decomposing into 9 cell types.
Using 8000 genes in both bulk and single-cell expression.
Converting single-cell counts to CPM and filtering zero variance genes.
Filtered 0 zero variance genes.
Converting bulk counts to CPM and filtering unexpressed genes.
Error in CountsToCPM(bulk.eset) :
Zero expression in selected genes for 1 cells

@Lingxuewang
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Have you solved this problem? Sorry to bother you. I encountered the same issue.

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