DESCRIPTION

Package: BisqueRNA
Title: Decomposition of Bulk Expression with Single-Cell Sequencing
Version: 1.0.5
Authors@R: c(
  person(given = 'Brandon', family = 'Jew', email = 'brandon.jew@ucla.edu', role = c('aut', 'cre')),
  person(given = 'Marcus', family = 'Alvarez', role = 'aut')
  )
Description: Provides tools to accurately estimate cell type abundances 
    from heterogeneous bulk expression. A reference-based method utilizes
    single-cell information to generate a signature matrix and transformation
    of bulk expression for accurate regression based estimates. A marker-based
    method utilizes known cell-specific marker genes to measure relative
    abundances across samples.
    For more details, see Jew and Alvarez et al (2019) <doi:10.1101/669911>.
Depends: R (>= 3.5.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
biocViews:
Imports:
  Biobase,
  limSolve,
  methods,
  stats
Suggests:
    Seurat,
    plyr,
    knitr,
    rmarkdown,
    testthat
URL: https://www.biorxiv.org/content/10.1101/669911v1
BugReports: https://github.com/cozygene/bisque/issues
VignetteBuilder: knitr