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Conda build is stuck with some unrelated build aterfacts. Unable to purge them. #5273

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pbordron opened this issue Apr 9, 2024 · 0 comments
Open
2 tasks done

Conda build is stuck with some unrelated build aterfacts. Unable to purge them. #5273

pbordron opened this issue Apr 9, 2024 · 0 comments
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type::bug describes erroneous operation, use severity::* to classify the type

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@pbordron
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pbordron commented Apr 9, 2024

Checklist

  • I added a descriptive title
  • I searched open reports and couldn't find a duplicate

What happened?

I try to add a dual license to a recipe with this entry:

about:
  license:
    - Artistic-1.0-Perl
    - GPL-1.0-or-later

At build time, I get an error conda.auxlib.exceptions.ValidationError: Invalid value ['Artistic-1.0-Perl', 'GPL-1.0-or-later'] for license

Since, when I try to build any recipe. I get this error, even if the meta.yaml don't contain those licenses. For example, this file (with an empty build.sh next to it) produces the above error:

package:
  name: test

I was able to solve the issue by using conda build purge-all, but this behavior is clearly a bug.

Conda Info

active environment : base
    active env location : /home/pbordron/.local/miniconda3
            shell level : 1
       user config file : /home/pbordron/.condarc
 populated config files : /home/pbordron/.condarc
          conda version : 24.3.0
    conda-build version : 24.3.0
         python version : 3.11.8.final.0
                 solver : libmamba (default)
       virtual packages : __archspec=1=icelake
                          __conda=24.3.0=0
                          __glibc=2.31=0
                          __linux=5.15.0=0
                          __unix=0=0
       base environment : /home/pbordron/.local/miniconda3  (writable)
      conda av data dir : /home/pbordron/.local/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          file:///home/pbordron/.local/miniconda3/conda-bld/linux-64
                          file:///home/pbordron/.local/miniconda3/conda-bld/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/pbordron/.local/miniconda3/pkgs
                          /home/pbordron/.conda/pkgs
       envs directories : /home/pbordron/.local/miniconda3/envs
                          /home/pbordron/.conda/envs
               platform : linux-64
             user-agent : conda/24.3.0 requests/2.31.0 CPython/3.11.8 Linux/5.15.0-102-generic linuxmint/20.3 glibc/2.31 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.8
                UID:GID : 4063:500
             netrc file : None
           offline mode : False

Conda Config

==> /home/pbordron/.condarc <==
allow_conda_downgrades: True
auto_activate_base: False
channels:
  - conda-forge
  - bioconda
  - file:///home/pbordron/.local/miniconda3/conda-bld/
  - defaults
report_errors: False
solver: libmamba

Conda list

# packages in environment at /home/pbordron/.local/miniconda3:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
archspec                  0.2.3              pyhd8ed1ab_0    conda-forge
attrs                     23.2.0             pyh71513ae_0    conda-forge
beautifulsoup4            4.12.3             pyha770c72_0    conda-forge
boltons                   24.0.0             pyhd8ed1ab_0    conda-forge
brotli                    1.1.0                hd590300_1    conda-forge
brotli-bin                1.1.0                hd590300_1    conda-forge
brotli-python             1.1.0           py311hb755f60_1    conda-forge
brotlipy                  0.7.0           py311h459d7ec_1006    conda-forge
bzip2                     1.0.8                hd590300_5    conda-forge
c-ares                    1.28.1               hd590300_0    conda-forge
ca-certificates           2024.2.2             hbcca054_0    conda-forge
certifi                   2024.2.2           pyhd8ed1ab_0    conda-forge
cffi                      1.16.0          py311hb3a22ac_0    conda-forge
chardet                   5.2.0           py311h38be061_1    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
conda                     24.3.0          py311h38be061_0    conda-forge
conda-build               24.3.0          py311h38be061_1    conda-forge
conda-index               0.4.0              pyhd8ed1ab_0    conda-forge
conda-libmamba-solver     24.1.0             pyhd8ed1ab_0    conda-forge
conda-package-handling    2.2.0              pyh38be061_0    conda-forge
conda-package-streaming   0.9.0              pyhd8ed1ab_0    conda-forge
conda-verify              3.1.1           py311h38be061_1006    conda-forge
cryptography              42.0.5          py311h63ff55d_0    conda-forge
distro                    1.9.0              pyhd8ed1ab_0    conda-forge
filelock                  3.13.3             pyhd8ed1ab_0    conda-forge
fmt                       10.2.1               h00ab1b0_0    conda-forge
future                    1.0.0              pyhd8ed1ab_0    conda-forge
glob2                     0.7                        py_0    conda-forge
icu                       73.2                 h59595ed_0    conda-forge
idna                      3.6                pyhd8ed1ab_0    conda-forge
importlib_resources       6.4.0              pyhd8ed1ab_0    conda-forge
jinja2                    3.1.3              pyhd8ed1ab_0    conda-forge
jsonpatch                 1.33               pyhd8ed1ab_0    conda-forge
jsonpointer               2.4             py311h38be061_3    conda-forge
jsonschema                4.21.1             pyhd8ed1ab_0    conda-forge
jsonschema-specifications 2023.12.1          pyhd8ed1ab_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.21.2               h659d440_0    conda-forge
ld_impl_linux-64          2.40                 h41732ed_0    conda-forge
libarchive                3.7.2                h2aa1ff5_1    conda-forge
libbrotlicommon           1.1.0                hd590300_1    conda-forge
libbrotlidec              1.1.0                hd590300_1    conda-forge
libbrotlienc              1.1.0                hd590300_1    conda-forge
libcurl                   8.7.1                hca28451_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 hd590300_2    conda-forge
libexpat                  2.6.2                h59595ed_0    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 13.2.0               h807b86a_5    conda-forge
libgomp                   13.2.0               h807b86a_5    conda-forge
libiconv                  1.17                 hd590300_2    conda-forge
liblief                   0.14.1               hac33072_1    conda-forge
libmamba                  1.5.8                had39da4_0    conda-forge
libmambapy                1.5.8           py311hf2555c7_0    conda-forge
libnghttp2                1.58.0               h47da74e_1    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libsolv                   0.7.28               hfc55251_2    conda-forge
libsqlite                 3.45.2               h2797004_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-ng              13.2.0               h7e041cc_5    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libxml2                   2.12.6               h232c23b_1    conda-forge
libzlib                   1.2.13               hd590300_5    conda-forge
llvm-openmp               18.1.3               h4dfa4b3_0    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
mamba                     1.5.8           py311h3072747_0    conda-forge
markupsafe                2.1.5           py311h459d7ec_0    conda-forge
menuinst                  2.0.2           py311h38be061_0    conda-forge
more-itertools            10.2.0             pyhd8ed1ab_0    conda-forge
ncurses                   6.4.20240210         h59595ed_0    conda-forge
openssl                   3.2.1                hd590300_1    conda-forge
packaging                 24.0               pyhd8ed1ab_0    conda-forge
patch                     2.7.6             h7f98852_1002    conda-forge
patchelf                  0.18.0               h59595ed_0    conda-forge
pip                       24.0               pyhd8ed1ab_0    conda-forge
pkginfo                   1.10.0             pyhd8ed1ab_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_1    conda-forge
platformdirs              4.2.0              pyhd8ed1ab_0    conda-forge
pluggy                    1.4.0              pyhd8ed1ab_0    conda-forge
psutil                    5.9.8           py311h459d7ec_0    conda-forge
py-lief                   0.14.1          py311h4332511_1    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycosat                   0.6.6           py311h459d7ec_0    conda-forge
pycparser                 2.22               pyhd8ed1ab_0    conda-forge
pyopenssl                 24.0.0             pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.11.8          hab00c5b_0_cpython    conda-forge
python-libarchive-c       5.1             py311h38be061_0    conda-forge
python_abi                3.11                    4_cp311    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0.1           py311h459d7ec_1    conda-forge
readline                  8.2                  h8228510_1    conda-forge
referencing               0.34.0             pyhd8ed1ab_0    conda-forge
reproc                    14.2.4.post0         hd590300_1    conda-forge
reproc-cpp                14.2.4.post0         h59595ed_1    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
ripgrep                   14.1.0               he8a937b_0    conda-forge
rpds-py                   0.18.0          py311h46250e7_0    conda-forge
ruamel.yaml               0.18.6          py311h459d7ec_0    conda-forge
ruamel.yaml.clib          0.2.8           py311h459d7ec_0    conda-forge
ruamel_yaml               0.15.80         py311h459d7ec_1009    conda-forge
setuptools                69.2.0             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
sqlite                    3.45.2               h2c6b66d_0    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.12.1             pyhd8ed1ab_0    conda-forge
tqdm                      4.66.2             pyhd8ed1ab_0    conda-forge
truststore                0.8.0              pyhd8ed1ab_0    conda-forge
tzdata                    2024a                h0c530f3_0    conda-forge
urllib3                   2.2.1              pyhd8ed1ab_0    conda-forge
wheel                     0.43.0             pyhd8ed1ab_1    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.8.0                h59595ed_0    conda-forge
zipp                      3.17.0             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hd590300_5    conda-forge
zstandard                 0.22.0          py311haa97af0_0    conda-forge
zstd                      1.5.5                hfc55251_0    conda-forge

Additional Context

The complete error message

WARNING: No numpy version specified in conda_build_config.yaml.  Falling back to default numpy value of 1.23
Adding in variants from internal_defaults
Attempting to finalize metadata for test

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/exception_handler.py", line 17, in __call__
        return func(*args, **kwargs)
               ^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/cli/main.py", line 83, in main_subshell
        exit_code = do_call(args, parser)
                    ^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/cli/conda_argparse.py", line 175, in do_call
        result = plugin_subcommand.action(getattr(args, "_args", args))
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/plugin.py", line 17, in build
        return execute(args)
               ^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/cli/main_build.py", line 581, in execute
        api.build(
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/api.py", line 250, in build
        return build_tree(
               ^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/build.py", line 3762, in build_tree
        packages_from_this = build(
                             ^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/build.py", line 2436, in build
        output_metas = expand_outputs([(m, need_source_download, need_reparse_in_env)])
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/render.py", line 923, in expand_outputs
        for output_dict, m in deepcopy(_m).get_output_metadata_set(
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/metadata.py", line 2613, in get_output_metadata_set
        conda_packages = finalize_outputs_pass(
                         ^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/metadata.py", line 949, in finalize_outputs_pass
        fm = finalize_metadata(
             ^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/render.py", line 645, in finalize_metadata
        build_unsat, host_unsat = add_upstream_pins(
                                  ^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/render.py", line 460, in add_upstream_pins
        build_deps, build_unsat, extra_run_specs_from_build = _read_upstream_pin_files(
                                                              ^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/render.py", line 439, in _read_upstream_pin_files
        deps, precs, unsat = get_env_dependencies(
                             ^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/render.py", line 152, in get_env_dependencies
        precs = environ.get_package_records(
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/environ.py", line 937, in get_install_actions
        index, index_ts, _ = get_build_index(
                             ^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/index.py", line 125, in get_build_index
        _delegated_update_index(output_folder, verbose=debug)
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_build/index.py", line 239, in _delegated_update_index
        return _update_index(
               ^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_index/index/__init__.py", line 164, in update_index
        channel_index.index(
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_index/index/__init__.py", line 590, in index
        result = future.result()
                 ^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_index/index/__init__.py", line 67, in result
        return func(*args, **kwargs)
               ^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_index/index/__init__.py", line 636, in index_prepared_subdir
        current_repodata = _build_current_repodata(
                           ^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_index/index/__init__.py", line 445, in _build_current_repodata
        r = _get_resolve_object(subdir, repodata=repodata)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_index/index/__init__.py", line 355, in _get_resolve_object
        index = {prec: prec for prec in precs or sd._package_records}
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda_index/index/__init__.py", line 355, in <dictcomp>
        index = {prec: prec for prec in precs or sd._package_records}
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "<frozen _collections_abc>", line 993, in __iter__
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/core/subdir_data.py", line 100, in __getitem__
        record = PackageRecord(**record)
                 ^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/auxlib/entity.py", line 743, in __call__
        instance = super().__call__(*args, **kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/models/records.py", line 418, in __init__
        super().__init__(*args, **kwargs)
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/auxlib/entity.py", line 759, in __init__
        setattr(self, key, kwargs[key])
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/auxlib/entity.py", line 426, in __set__
        instance.__dict__[self.name] = self.validate(
                                       ^^^^^^^^^^^^^^
      File "/home/pbordron/.local/miniconda3/lib/python3.11/site-packages/conda/auxlib/entity.py", line 471, in validate
        raise ValidationError(getattr(self, 'name', 'undefined name'), val)
    conda.auxlib.exceptions.ValidationError: Invalid value ['Artistic-1.0-Perl', 'GPL-1.0-or-later'] for license
@pbordron pbordron added the type::bug describes erroneous operation, use severity::* to classify the type label Apr 9, 2024
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