{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":770500814,"defaultBranch":"main","name":"molexpress","ownerLogin":"compomics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2024-03-11T16:57:21.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/11630937?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715869285.0","currentOid":""},"activityList":{"items":[{"before":"6cede57fb64b1ea194a576718a98432e271e3146","after":"8927de272f54e749efdc31379d0986bf2ade714e","ref":"refs/heads/main","pushedAt":"2024-09-19T15:22:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"fix edge_softmax implementation","shortMessageHtmlLink":"fix edge_softmax implementation"}},{"before":"b1363e5ba1c4d82112f5108f8aa07d6da8f23cee","after":"6cede57fb64b1ea194a576718a98432e271e3146","ref":"refs/heads/main","pushedAt":"2024-06-21T15:39:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"comment out edge_weight","shortMessageHtmlLink":"comment out edge_weight"}},{"before":"bb6aaed35618db713f6ff837d6a5f12daca383be","after":"b1363e5ba1c4d82112f5108f8aa07d6da8f23cee","ref":"refs/heads/main","pushedAt":"2024-06-21T15:34:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"add gatv2","shortMessageHtmlLink":"add gatv2"}},{"before":"784e169d2b4fdd988bdae25d3ec299d78de9fd75","after":"bb6aaed35618db713f6ff837d6a5f12daca383be","ref":"refs/heads/main","pushedAt":"2024-06-21T12:18:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"update example notebook","shortMessageHtmlLink":"update example notebook"}},{"before":"7b010c353584fd58ac519a01507424303f268721","after":"784e169d2b4fdd988bdae25d3ec299d78de9fd75","ref":"refs/heads/main","pushedAt":"2024-06-21T12:17:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"change default masking rate values, and update example notebook","shortMessageHtmlLink":"change default masking rate values, and update example notebook"}},{"before":"a92e4d240e562c2be19e0d434f455dc6ae8ed4ce","after":"7b010c353584fd58ac519a01507424303f268721","ref":"refs/heads/main","pushedAt":"2024-06-21T12:10:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"add pretraining modules","shortMessageHtmlLink":"add pretraining modules"}},{"before":"950bc8350fe4d5b91eaab35686d750b92ae40345","after":"a92e4d240e562c2be19e0d434f455dc6ae8ed4ce","ref":"refs/heads/main","pushedAt":"2024-05-16T18:59:37.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"Merge pull request #4 from compomics/cache-residue-encoding\n\nAdd caching for encoding individual residues in PeptideGraphEncoder","shortMessageHtmlLink":"Merge pull request #4 from compomics/cache-residue-encoding"}},{"before":"f75e9aab2701d9715ed4703f058a1209a605d355","after":"ef160381e75ec41a4b764cd7970408cd771d4595","ref":"refs/heads/cache-residue-encoding","pushedAt":"2024-05-16T16:58:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Fix addition assignment operator issue in GINConv (see https://discuss.pytorch.org/t/use-of-the-addition-assignment-operator-on-a-tensor-leads-to-a-runtimeerror/202898)","shortMessageHtmlLink":"Fix addition assignment operator issue in GINConv (see https://discus…"}},{"before":null,"after":"f75e9aab2701d9715ed4703f058a1209a605d355","ref":"refs/heads/cache-residue-encoding","pushedAt":"2024-05-16T14:21:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Add caching for encoding individual residues in PeptideGraphEncoder","shortMessageHtmlLink":"Add caching for encoding individual residues in PeptideGraphEncoder"}},{"before":"782e1e73cc245bfd255a7dc405e1b2d2ee7684f3","after":"04f9157c173fa5f5b8ce3951d5c383c8e99e66d4","ref":"refs/heads/fixes","pushedAt":"2024-05-13T15:21:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Update example notebook","shortMessageHtmlLink":"Update example notebook"}},{"before":"bafbdf28a81027d5f0a59edc86b979f034c0b069","after":"950bc8350fe4d5b91eaab35686d750b92ae40345","ref":"refs/heads/main","pushedAt":"2024-05-13T14:39:34.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"Merge pull request #3 from compomics/fixes\n\nVarious fixes","shortMessageHtmlLink":"Merge pull request #3 from compomics/fixes"}},{"before":null,"after":"782e1e73cc245bfd255a7dc405e1b2d2ee7684f3","ref":"refs/heads/fixes","pushedAt":"2024-05-13T14:12:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Fix collate_fn when batch also includes label","shortMessageHtmlLink":"Fix collate_fn when batch also includes label"}},{"before":"cd50b19257109fd7a2d2f8ab082d1c535e462dd8","after":"bafbdf28a81027d5f0a59edc86b979f034c0b069","ref":"refs/heads/main","pushedAt":"2024-04-25T13:07:03.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"Merge pull request #2 from compomics/update-pyproject\n\nFix package discovery","shortMessageHtmlLink":"Merge pull request #2 from compomics/update-pyproject"}},{"before":null,"after":"bcd8ce5b2f478a2adc409c8ab7831a3e8cc5f95d","ref":"refs/heads/update-pyproject","pushedAt":"2024-04-24T13:59:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Fix package discovery","shortMessageHtmlLink":"Fix package discovery"}},{"before":"155bed154c1f9e33dfc1828a972f0b713409b706","after":"cd50b19257109fd7a2d2f8ab082d1c535e462dd8","ref":"refs/heads/main","pushedAt":"2024-04-15T14:53:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"improve readability","shortMessageHtmlLink":"improve readability"}},{"before":"8b21fafcf4b7ee70745c9699d838f61807d4a6a7","after":"155bed154c1f9e33dfc1828a972f0b713409b706","ref":"refs/heads/main","pushedAt":"2024-04-15T14:39:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"rewrite code for peptides, including residue readout","shortMessageHtmlLink":"rewrite code for peptides, including residue readout"}},{"before":"1c8b0536b2c5d28e787650971e6400ff76c483b9","after":null,"ref":"refs/heads/pyproject","pushedAt":"2024-04-12T08:10:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"}},{"before":"9a88c5dc36b0e04a13d0f32d12d5c61379d5d1fa","after":"8b21fafcf4b7ee70745c9699d838f61807d4a6a7","ref":"refs/heads/main","pushedAt":"2024-04-12T08:10:03.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"Merge pull request #1 from compomics/pyproject\n\nProject structure changes","shortMessageHtmlLink":"Merge pull request #1 from compomics/pyproject"}},{"before":"b1451bc2df162341d4edebd88e1d57ea21d7c519","after":"1c8b0536b2c5d28e787650971e6400ff76c483b9","ref":"refs/heads/pyproject","pushedAt":"2024-04-11T13:54:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Fix linting errors","shortMessageHtmlLink":"Fix linting errors"}},{"before":"955040e1c8c85a39d9f069d900f6490c16f5fcb1","after":"b1451bc2df162341d4edebd88e1d57ea21d7c519","ref":"refs/heads/pyproject","pushedAt":"2024-04-11T13:51:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/compomics/molexpress into pyproject","shortMessageHtmlLink":"Merge branch 'main' of https://github.com/compomics/molexpress into p…"}},{"before":"b622eb99f4cf88ffc1daddff95c48782f28fa14d","after":"955040e1c8c85a39d9f069d900f6490c16f5fcb1","ref":"refs/heads/pyproject","pushedAt":"2024-04-11T13:29:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Add test CI (only linting for now)","shortMessageHtmlLink":"Add test CI (only linting for now)"}},{"before":null,"after":"b622eb99f4cf88ffc1daddff95c48782f28fa14d","ref":"refs/heads/pyproject","pushedAt":"2024-04-11T12:05:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"RalfG","name":"Ralf Gabriels","path":"/RalfG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26458971?s=80&v=4"},"commit":{"message":"Fix compatibility with Python >= 3.9 (minimal for Keras); Automated ruff formatting","shortMessageHtmlLink":"Fix compatibility with Python >= 3.9 (minimal for Keras); Automated r…"}},{"before":"1b20cec57dc31ed84576dd54c8d41f7961a4f576","after":"9a88c5dc36b0e04a13d0f32d12d5c61379d5d1fa","ref":"refs/heads/main","pushedAt":"2024-04-10T13:07:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"fix bug","shortMessageHtmlLink":"fix bug"}},{"before":"41e0c23948f74d6992b68c16a8f7c966df49e78f","after":"1b20cec57dc31ed84576dd54c8d41f7961a4f576","ref":"refs/heads/main","pushedAt":"2024-03-14T10:08:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"update notebook","shortMessageHtmlLink":"update notebook"}},{"before":"3238f3e6b11892312e576bf326189da4112dda35","after":"41e0c23948f74d6992b68c16a8f7c966df49e78f","ref":"refs/heads/main","pushedAt":"2024-03-14T10:04:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"fix compute_output_shape","shortMessageHtmlLink":"fix compute_output_shape"}},{"before":"5a13304da6db9da8bce810a35c40bbd4dea9c213","after":"3238f3e6b11892312e576bf326189da4112dda35","ref":"refs/heads/main","pushedAt":"2024-03-14T10:00:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"fix small bug","shortMessageHtmlLink":"fix small bug"}},{"before":"1b783f00d058248175c499021eea9bc565d8fa0c","after":"5a13304da6db9da8bce810a35c40bbd4dea9c213","ref":"refs/heads/main","pushedAt":"2024-03-13T17:53:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"another update","shortMessageHtmlLink":"another update"}},{"before":"3b9327e8c84f822fe18a501be3cecea6e14eeb78","after":"1b783f00d058248175c499021eea9bc565d8fa0c","ref":"refs/heads/main","pushedAt":"2024-03-13T17:34:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"8363977a61b7fb6b5bf1a0a69d11e07e7a66b6c1","after":"3b9327e8c84f822fe18a501be3cecea6e14eeb78","ref":"refs/heads/main","pushedAt":"2024-03-13T15:07:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"fix bug in features","shortMessageHtmlLink":"fix bug in features"}},{"before":"cfc700d90e97248fcf6873e23556df165a9cd1a8","after":"8363977a61b7fb6b5bf1a0a69d11e07e7a66b6c1","ref":"refs/heads/main","pushedAt":"2024-03-11T18:11:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"akensert","name":"Alexander Kensert","path":"/akensert","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33224626?s=80&v=4"},"commit":{"message":"add gin","shortMessageHtmlLink":"add gin"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xOVQxNToyMjowNy4wMDAwMDBazwAAAAS7B2Vy","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xOVQxNToyMjowNy4wMDAwMDBazwAAAAS7B2Vy","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMy0xMVQxODoxMTo1NC4wMDAwMDBazwAAAAQSmamA"}},"title":"Activity · compomics/molexpress"}