Dockerfile

FROM jupyterhub/jupyterhub
MAINTAINER Ben Neely <nigelneely@gmail.com>

# install node.js and npm
RUN apt-get -qq update && apt-get install -y \
  git \
  vim \
  build-essential \
  libtiff5-dev \
  libfftw3-dev \
  automake \
  python-dev \
  python-setuptools \
  python-numpy \
  python-scipy \
  python-matplotlib \
  python-tifffile \
  python-pandas \
  python-sklearn \
  python-skimage \
  swig

RUN git clone https://github.com/wnd-charm/wnd-charm.git /wnd-charm
RUN cd /wnd-charm && ./configure && touch * && make && make install

RUN cd /wnd-charm && /usr/bin/python2.7 setup.py build
RUN cd /wnd-charm && /usr/bin/python2.7 setup.py install
RUN apt-get install -y python-pip

RUN /usr/bin/python2.7 -c "import pip; pip.main(['install','ipykernel'])"
RUN /usr/bin/python2.7 -m ipykernel install

RUN pip install jupyter
RUN pip install jupyterlab
RUN jupyter serverextension enable --py jupyterlab --sys-prefix
RUN useradd -ms /bin/bash newuser
#add password
#ensure home folder is accessible to jupyterhub

ADD jupyterhub_config.py /srv/jupyterhub/jupyterhub_config.py