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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(find_all_markers)
export(genes_to_transcripts)
export(get_colData)
export(get_feature_types)
export(get_features)
export(get_variable_features)
export(integration_workflow)
export(load_bigwigs)
export(propagate_spreadsheet_changes)
export(query_experiment)
export(record_experiment_data)
export(regress_cell_cycle)
export(reintegrate_sce)
export(sce_calcn)
export(sce_cluster)
export(sce_de)
export(sce_integrate)
export(sce_process)
export(set_colData)
export(set_feature_type)
export(splitByCol)
export(transcripts_to_genes)
import(SingleCellExperiment)
importFrom(DBI,dbConnect)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbReadTable)
importFrom(DBI,dbWriteTable)
importFrom(EnsDb.Hsapiens.v86,EnsDb.Hsapiens.v86)
importFrom(GenomicFeatures,transcripts)
importFrom(RSQLite,SQLite)
importFrom(S4Vectors,metadata)
importFrom(batchelor,NoCorrectParam)
importFrom(batchelor,correctExperiments)
importFrom(batchelor,regressBatches)
importFrom(bluster,NNGraphParam)
importFrom(circlize,colorRamp2)
importFrom(cluster,agnes)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,coalesce)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,one_of)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,top_n)
importFrom(ensembldb,transcripts)
importFrom(fs,dir_ls)
importFrom(fs,path)
importFrom(fs,path_abs)
importFrom(fs,path_dir)
importFrom(fs,path_expand)
importFrom(fs,path_ext_remove)
importFrom(fs,path_ext_set)
importFrom(fs,path_file)
importFrom(glue,glue)
importFrom(megadepth,bam_to_bigwig)
importFrom(methods,"slot<-")
importFrom(methods,is)
importFrom(methods,slot)
importFrom(purrr,flatten_chr)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_if)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(purrr,pmap)
importFrom(purrr,reduce)
importFrom(scater,runPCA)
importFrom(scater,runTSNE)
importFrom(scater,runUMAP)
importFrom(scran,clusterCells)
importFrom(scran,computeSumFactors)
importFrom(scran,cyclone)
importFrom(scran,findMarkers)
importFrom(scran,getTopHVGs)
importFrom(scran,modelGeneVar)
importFrom(scran,quickCluster)
importFrom(scuttle,addPerCellQCMetrics)
importFrom(scuttle,logNormCounts)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_to_title)
importFrom(tibble,column_to_rownames)
importFrom(tibble,enframe)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyselect,any_of)
importFrom(tidyselect,contains)
importFrom(tidyselect,where)
importFrom(utils,capture.output)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,sessionInfo)