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Concoct bins missing #106

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susheelbhanu opened this issue Jun 1, 2024 · 0 comments
Open

Concoct bins missing #106

susheelbhanu opened this issue Jun 1, 2024 · 0 comments

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@susheelbhanu
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Hi,

I'm using DAS_Tool to dereplicate concoct and metabat bins and my input files look as follows:

(base) $> head concoct_das.tsv
s100:k87_1217451        bin_concoct_3
s100:k87_923584 bin_concoct_122
s100:k87_965570 bin_concoct_165
s100:k87_461800 bin_concoct_303
s100:k87_923587 bin_concoct_35
s100:k87_1091511        bin_concoct_165
s100:k87_13     bin_concoct_300
s100:k87_1343405        bin_concoct_35
s100:k87_1343406        bin_concoct_83
s100:k87_335868 bin_concoct_255

(base) $> head metabat_das.tsv
s110:k87_1709125        bin_metabat_1000
s131:k87_725482 bin_metabat_1000
s82:k87_1844943 bin_metabat_1000
s82:k87_1986846 bin_metabat_1000
s82:k87_2484037 bin_metabat_1000
s82:k87_1987200 bin_metabat_1000
s82:k87_2342331 bin_metabat_1000
s82:k87_1420151 bin_metabat_1000
s82:k87_497698  bin_metabat_1000
s82:k87_1562071 bin_metabat_1000

Interestingly, in the DASTool_contig2bin.tsv file, the concoct bins are missing. The same is true for the das_DASTool_summary.tsv file.

Any idea what's going on? I'm attaching the various files if it helps.

Thanks,
Susheel

das_DASTool_summary.txt
das_DASTool.log.txt
das_DASTool_contig2bin.txt

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