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Author: dwest77a

_modules/cfapyx/backend.html

@@ -109,7 +109,7 @@ <h1>Source code for cfapyx.backend</h1><div class="highlight"><pre>
 <span class="k">def</span><span class="w"> </span><span class="nf">open_cfa_dataset</span><span class="p">(</span>
         <span class="n">filename_or_obj</span><span class="p">,</span>
         <span class="n">drop_variables</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-        <span class="n">mask_and_scale</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+        <span class="n">mask_and_scale</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
         <span class="n">decode_times</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
         <span class="n">concat_characters</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
         <span class="n">decode_coords</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
@@ -180,7 +180,7 @@ <h1>Source code for cfapyx.backend</h1><div class="highlight"><pre>
             <span class="n">filename_or_obj</span><span class="p">,</span>
             <span class="o">*</span><span class="p">,</span>
             <span class="n">drop_variables</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
-            <span class="n">mask_and_scale</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
+            <span class="n">mask_and_scale</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
             <span class="n">decode_times</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
             <span class="n">concat_characters</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
             <span class="n">decode_coords</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>

_modules/cfapyx/creator.html

@@ -646,10 +646,14 @@ <h1>Source code for cfapyx.creator</h1><div class="highlight"><pre>
                     <span class="k">if</span> <span class="ow">not</span> <span class="n">np</span><span class="o">.</span><span class="n">array_equal</span><span class="p">(</span><span class="n">attrs</span><span class="p">[</span><span class="n">attr</span><span class="p">],</span> <span class="n">ncattrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]):</span>
                         <span class="n">attrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">concat_msg</span>
                     <span class="k">continue</span>
-                <span class="k">if</span> <span class="n">attrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span> <span class="o">!=</span> <span class="n">ncattrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]:</span>
+                <span class="k">try</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="n">attrs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">attr</span><span class="p">)</span> <span class="o">!=</span> <span class="n">ncattrs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="n">attr</span><span class="p">):</span>
+                        <span class="n">attrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">concat_msg</span>
+                    <span class="k">else</span><span class="p">:</span>
+                        <span class="n">attrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span> <span class="o">=</span> <span class="n">ncattrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span>
+                <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+                    <span class="c1"># Typically numpy array comparisons fail here.</span>
                     <span class="n">attrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">concat_msg</span>
-                <span class="k">else</span><span class="p">:</span>
-                    <span class="n">attrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span> <span class="o">=</span> <span class="n">ncattrs</span><span class="p">[</span><span class="n">attr</span><span class="p">]</span>
         <span class="k">return</span> <span class="n">attrs</span></div>
 </div>
 

backend.html

@@ -101,7 +101,7 @@
 <span id="xarray-backend-entrypoint-for-cfapyx"></span><h1>Xarray Backend Entrypoint for cfapyx<a class="headerlink" href="#module-cfapyx.backend" title="Link to this heading"></a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cfapyx.backend.open_cfa_dataset">
-<span class="sig-prename descclassname"><span class="pre">cfapyx.backend.</span></span><span class="sig-name descname"><span class="pre">open_cfa_dataset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename_or_obj</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">drop_variables</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask_and_scale</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_times</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">concat_characters</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_coords</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_cftime</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_timedelta</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cfa_options</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">dict</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cfapyx/backend.html#open_cfa_dataset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cfapyx.backend.open_cfa_dataset" title="Link to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">cfapyx.backend.</span></span><span class="sig-name descname"><span class="pre">open_cfa_dataset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename_or_obj</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">drop_variables</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask_and_scale</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_times</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">concat_characters</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_coords</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_cftime</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_timedelta</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cfa_options</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><span class="pre">dict</span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cfapyx/backend.html#open_cfa_dataset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cfapyx.backend.open_cfa_dataset" title="Link to this definition"></a></dt>
 <dd><p>Top-level function which opens a CFA dataset using Xarray.</p>
 <p>Creates a CFA Datastore 
 from the <code class="docutils literal notranslate"><span class="pre">filename_or_obj</span></code> provided, then passes this to a CFA StoreBackendEntrypoint
@@ -133,7 +133,7 @@
 <dd><p>Open CFA-netCDF files (.nca) using ‘cfapyx’ in Xarray</p>
 <dl class="py method">
 <dt class="sig sig-object py" id="cfapyx.backend.CFANetCDFBackendEntrypoint.open_dataset">
-<span class="sig-name descname"><span class="pre">open_dataset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename_or_obj</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">drop_variables</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask_and_scale</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_times</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">concat_characters</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_coords</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_cftime</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_timedelta</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cfa_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cfapyx/backend.html#CFANetCDFBackendEntrypoint.open_dataset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cfapyx.backend.CFANetCDFBackendEntrypoint.open_dataset" title="Link to this definition"></a></dt>
+<span class="sig-name descname"><span class="pre">open_dataset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">filename_or_obj</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">drop_variables</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mask_and_scale</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_times</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">concat_characters</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_coords</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_cftime</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">decode_timedelta</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cfa_options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cfapyx/backend.html#CFANetCDFBackendEntrypoint.open_dataset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cfapyx.backend.CFANetCDFBackendEntrypoint.open_dataset" title="Link to this definition"></a></dt>
 <dd><p>Returns a complete xarray representation of a CFA-netCDF dataset which includes expanding/decoding
 CFA aggregated variables into proper arrays.</p>
 </dd></dl>

datastore.html

@@ -102,7 +102,7 @@
 <span id="cfa-datastore-in-xarray"></span><h1>CFA Datastore in Xarray<a class="headerlink" href="#module-cfapyx.datastore" title="Link to this heading"></a></h1>
 <dl class="py class">
 <dt class="sig sig-object py" id="cfapyx.datastore.CFADataStore">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cfapyx.datastore.</span></span><span class="sig-name descname"><span class="pre">CFADataStore</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">manager</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mode=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">lock=CombinedLock([&lt;SerializableLock:</span> <span class="pre">3c696b8b-473e-4c75-beae-14ccd69828b8&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">&lt;SerializableLock:</span> <span class="pre">3b59d512-8d10-4309-b845-08388bb54dfa&gt;])</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">autoclose=False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cfapyx/datastore.html#CFADataStore"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cfapyx.datastore.CFADataStore" title="Link to this definition"></a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cfapyx.datastore.</span></span><span class="sig-name descname"><span class="pre">CFADataStore</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">manager</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">group=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mode=None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">lock=CombinedLock([&lt;SerializableLock:</span> <span class="pre">73d481b3-f118-4698-9b4f-649be54baf6b&gt;</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">&lt;SerializableLock:</span> <span class="pre">6039f24a-ccb7-48e2-9336-02bfb6dd5c67&gt;])</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">autoclose=False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cfapyx/datastore.html#CFADataStore"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cfapyx.datastore.CFADataStore" title="Link to this definition"></a></dt>
 <dd><p>DataStore container for the CFA-netCDF loaded file. Contains all unpacking routines 
 directly related to the specific variables and attributes. The <code class="docutils literal notranslate"><span class="pre">NetCDF4Datastore</span></code>
 Xarray class from which this class inherits, has an <code class="docutils literal notranslate"><span class="pre">__init__</span></code> method which