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conf.mk
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conf.mk
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#
# Configuration file for a RASE database. Defines k-mer size resistance
# breakpoints for individual antibiotics and the order of antibiotics for
# plotting.
#
# Author: Karel Brinda <[email protected]>
#
# License: MIT
#
#########
# INDEX #
#########
#db name
name=ngonorrhoeae-gisp
# k-mer size, can contain multiple values
k=18
###############
# ANTIBIOTICS #
###############
antibiotics:=azm cfm cip cro
###############
# BREAKPOINTS #
###############
# ESC = extended-spectrum cephalosporin
azm=2.000 # azithromycin (AZI in the original paper)
cfm=0.250 # cefixime (CFX in the original paper, belongs to ESC)
cip=1.000 # ciprofloxacin (CIPRO in the original paper)
cro=0.125 # ceftriaxone (CRO in the original paper, belongs to ESC)
export