Dependency Dashboard

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.

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• chore(deps): update github-actions (actions/upload-artifact, github/codeql-action, ossf/scorecard-action, sigstore/cosign-installer)

Open

These updates have all been created already. Click a checkbox below to force a retry/rebase of any.

• chore(deps): update docker.io/bitnami/kafka:3.6.1 docker digest to 9f05290
• chore(deps): update docker.io/datashield/rock-base:6.3 docker digest to 7f975c3
• chore(deps): update docker.io/obiba/opal:4.6 docker digest to ee627e8
• chore(deps): update all non-major dependencies (akhq, confluent-kafka, docker.io/bitnami/kafka, docker.io/library/postgres, docker.io/obiba/opal, docker.io/tchiotludo/akhq, fhir-gateway, ghcr.io/bzkf/obds-to-fhir, ghcr.io/miracum/fhir-gateway, ghcr.io/miracum/fhir-pseudonymizer, ghcr.io/miracum/kafka-fhir-to-server, ghcr.io/miracum/obds-to-fhir, ghcr.io/miracum/util-images/cricketeerone-kafka-connect, hapi-fhir-jpaserver, ipython, matplotlib, pandas, pydantic, pytest, regex, stream-processors, strimzi-kafka-operator, syrupy, xlsxwriter)
• chore(deps): update dependency numpy to v2
• chore(deps): update dependency pydantic to v2
• chore(deps): update dependency pytest to v8
• chore(deps): update dependency pytest-cov to v6
• chore(deps): update docker.io/hapiproject/hapi docker tag to v7
• chore(deps): update docker.io/library/postgres docker tag to v17
• chore(deps): update docker.io/obiba/opal docker tag to v5
• chore(deps): update ghcr.io/miracum/kafka-fhir-to-server docker tag to v2
• Click on this checkbox to rebase all open PRs at once

Detected dependencies

docker-compose

docker-compose/compose.decompose-xmls.yaml

docker-compose/compose.fhir-server.yaml

• docker.io/hapiproject/hapi v6.10.1@sha256:4eac1b3481180b028616d1fab7e657e368538063d75f7ed3be2032e34c657dd4
• docker.io/library/postgres 15.6@sha256:1ebd963e5c598f944a4e9ba27de4c95289d663dcc73731025aa53c5254094d8f
• ghcr.io/miracum/kafka-fhir-to-server v1.2.7@sha256:cabd9e0b233e11b17ddf4651fe0479f9c20381f51a26812864860df34b69cd3c

docker-compose/compose.full.yaml

• docker.io/bitnami/kafka 3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7
• ghcr.io/miracum/util-images/cricketeerone-kafka-connect v1.6.0@sha256:5d4c79d5b9d64562d8906aec14c66ed5f48ddb0f9e7f12949547ab89b69e3f0f
• docker.io/tchiotludo/akhq 0.24.0@sha256:6ccf8323ae6e93a893107f857cd9f7210add3569743b2c8528c6567967cc636f

docker-compose/compose.local-test.yaml

• docker.io/bitnami/kafka 3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7
• ghcr.io/miracum/util-images/cricketeerone-kafka-connect v1.6.0@sha256:5d4c79d5b9d64562d8906aec14c66ed5f48ddb0f9e7f12949547ab89b69e3f0f
• docker.io/tchiotludo/akhq 0.24.0@sha256:6ccf8323ae6e93a893107f857cd9f7210add3569743b2c8528c6567967cc636f
• ghcr.io/bzkf/obds-to-fhir v2.2.0@sha256:b5d264c849fb5a19d8af1677b6f9adc26d70108c22e4f2753d0b2472da39f038

docker-compose/compose.obds-fhir-to-opal.yaml

docker-compose/compose.obds-to-fhir.yaml

• ghcr.io/bzkf/obds-to-fhir v2.2.0@sha256:b5d264c849fb5a19d8af1677b6f9adc26d70108c22e4f2753d0b2472da39f038

docker-compose/compose.pseudonymization.yaml

• ghcr.io/miracum/fhir-gateway v3.12.8@sha256:2cf2d887b25594c04af3d6be302f8ccaea12dee90965fe4e2f81d24786ac3b6d
• ghcr.io/miracum/fhir-pseudonymizer v2.21.6@sha256:f250919efe324d31d9d442058256d6af58c0ea26980fc5852544a93cf8a71b1d

docker-compose/datashield/compose.datashield.yaml

• docker.io/obiba/opal 4.6@sha256:50abaa400d5b474981c951719301ce4f3c9f5058090cc878e5e82b1b35342881
• docker.io/library/postgres 16.2@sha256:4aea012537edfad80f98d870a36e6b90b4c09b27be7f4b4759d72db863baeebb
• docker.io/datashield/rock-base 6.3@sha256:ebb5be25ccdaa59ff780b55bb12208c365ab03d7c0dae3412578c97d6268f3e3
• docker.io/datashield/rock-base 6.3@sha256:ebb5be25ccdaa59ff780b55bb12208c365ab03d7c0dae3412578c97d6268f3e3
• docker.io/datashield/rock-base 6.3@sha256:ebb5be25ccdaa59ff780b55bb12208c365ab03d7c0dae3412578c97d6268f3e3

src/decompose_xmls/compose.yaml

• docker.io/bitnami/kafka 3.6.1@sha256:b5254050e61d1912ed9cf3f7107adc6a21ff29d85047b46d7b6df57cf25fa2f7
• docker.io/tchiotludo/akhq 0.24.0@sha256:6ccf8323ae6e93a893107f857cd9f7210add3569743b2c8528c6567967cc636f

src/obds_fhir_to_opal/compose.yaml

dockerfile

src/decompose_xmls/Dockerfile

src/obds_fhir_to_opal/Dockerfile

github-actions

.github/workflows/ci.yaml

• miracum/.github v1.13.1@4cc91eaee2ea6c0513da1195a6b53bb9c16f5666
• miracum/.github v1.13.1@4cc91eaee2ea6c0513da1195a6b53bb9c16f5666
• miracum/.github v1.13.1@4cc91eaee2ea6c0513da1195a6b53bb9c16f5666
• actions/checkout v4.2.2@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/setup-python v5.4.0@42375524e23c412d93fb67b49958b491fce71c38
• actions/checkout v4.2.2@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/upload-artifact v4.6.0@65c4c4a1ddee5b72f698fdd19549f0f0fb45cf08
• actions/checkout v4.2.2@11bd71901bbe5b1630ceea73d27597364c9af683
• ubuntu 24.04
• ubuntu 24.04
• ubuntu 24.04

.github/workflows/lint-pr-title.yaml

• amannn/action-semantic-pull-request v5.5.3@0723387faaf9b38adef4775cd42cfd5155ed6017
• ubuntu 24.04

.github/workflows/release-please.yaml

• google-github-actions/release-please-action v4.1.1@e4dc86ba9405554aeba3c6bb2d169500e7d3b4ee
• ubuntu 24.04

.github/workflows/release.yaml

• actions/checkout v4.2.2@11bd71901bbe5b1630ceea73d27597364c9af683
• sigstore/cosign-installer v3.7.0@dc72c7d5c4d10cd6bcb8cf6e3fd625a9e5e537da
• docker/login-action v3@9780b0c442fbb1117ed29e0efdff1e18412f7567
• actions/upload-artifact v4.6.0@65c4c4a1ddee5b72f698fdd19549f0f0fb45cf08
• actions/checkout v4.2.2@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/upload-artifact v4.6.0@65c4c4a1ddee5b72f698fdd19549f0f0fb45cf08
• actions/checkout v4.2.2@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/download-artifact v4@fa0a91b85d4f404e444e00e005971372dc801d16
• actions/download-artifact v4@fa0a91b85d4f404e444e00e005971372dc801d16
• softprops/action-gh-release v2@c95fe1489396fe8a9eb87c0abf8aa5b2ef267fda
• slsa-framework/slsa-github-generator v2.0.0
• ubuntu 24.04
• ubuntu 24.04
• ubuntu 24.04

.github/workflows/schedule.yaml

• miracum/.github v1.13.1@4cc91eaee2ea6c0513da1195a6b53bb9c16f5666

.github/workflows/scorecard.yaml

• actions/checkout v4.2.2@11bd71901bbe5b1630ceea73d27597364c9af683
• ossf/scorecard-action v2.4.0@62b2cac7ed8198b15735ed49ab1e5cf35480ba46
• actions/upload-artifact v4.6.0@65c4c4a1ddee5b72f698fdd19549f0f0fb45cf08
• github/codeql-action v3.28.8@dd746615b3b9d728a6a37ca2045b68ca76d4841a

helm-values

charts/onco-analytics-on-fhir/values.yaml

• ghcr.io/miracum/kafka-fhir-to-server v2.0.6@sha256:155859d275b636e356a99dac3592aa602eef6b68a8f1fe82f7e9670e2be1ef33
• ghcr.io/miracum/obds-to-fhir v2.0.15@sha256:c359ef5449068ff0c1231c3ee237801f2fb76932ab9a16386813d02c07ac9f7d

helmv3

charts/onco-analytics-on-fhir/Chart.yaml

• akhq 0.24.0
• stream-processors 1.6.0
• hapi-fhir-jpaserver 0.15.0
• fhir-gateway 6.2.0

charts/prerequisites/Chart.yaml

• strimzi-kafka-operator 0.39.0

pip_requirements

src/decompose_xmls/requirements-test.txt

• pytest ==7.4.4
• syrupy ==4.6.1
• pytest-cov ==4.1.0

src/decompose_xmls/requirements.txt

• pydantic ==1.10.14
• confluent-kafka ==2.3.0
• regex ==2024.5.15

src/obds_fhir_to_opal/DataSHIELD_R-Script/FederatedAnalysis_2024_BridgingDataSilosInOncology/plots/requirements.txt

• ipykernel ==6.29.5
• ipython ==8.26.0
• matplotlib ==3.9.1
• matplotlib-inline ==0.1.7
• numpy ==1.26.4
• pandas ==2.2.0
• seaborn ==0.13.2

src/obds_fhir_to_opal/requirements-test.txt

• pytest ==7.4.4
• pytest-cov ==4.1.0

src/obds_fhir_to_opal/requirements.txt

• pydantic ==1.10.14
• pandas ==2.2.0
• python-dateutil ==2.9.0.post0
• xlsxwriter ==3.2.0
• pytest ==7.4.3

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