Welcome! This is CytoPlots, a small package of plotting utilities for use when analysing cytometry data in Python. CytoPlots started as a module in the first release of CytoPy.
CytoPlots is now a standalone package that provides functions and classes for:
- Biaxial cytometry plots with common transforms such as logicle and arcsinh
- Scatterplots intended for visualising high dimensional embeddings from tools like UMAP and tSNE
- Density plots
- Box and swarm plots with statistical annotations
- Other cool utilities like a convenient wrapper on the matplotlib Figure object
For more information, check the full documentation here:
The CytoPy ecosystem is under development, see ### for details on release information.