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sooheelee
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CNV GetHetCoverage: mention tool is non-bayesian version of GetBeyesianHetCoverage (#1127)
* mention tool is non-bayesian version of GetBeyesianHetCoverage
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src/main/java/org/broadinstitute/hellbender/tools/copynumber/CollectAllelicCounts.java

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ParamUtils.isPositiveOrZero(minimumMappingQuality, "Mapping-quality threshold must be greater than or equal to zero.");
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ParamUtils.isPositiveOrZero(minimumBaseQuality, "Base-quality threshold must be greater than or equal to zero.");
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}
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}
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}

src/main/java/org/broadinstitute/hellbender/tools/exome/GetHetCoverage.java

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import java.io.File;
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/**
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* Outputs reference/alternate read counts at heterozygous SNP sites present in a normal sample
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* (and at the same sites in a tumor sample, if specified).
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* Outputs reference/alternate read counts at heterozygous SNP sites present in a normal sample,
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* and, if specified, at the same sites in a tumor sample.
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*
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* <p>The non-Bayesian version of {@link GetBayesianHetCoverage}. See GetBayesianHetCoverage for modes.</p>
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*
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* @author Samuel Lee &lt;[email protected]&gt;
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*/

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