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setting up viz Enrich widget #60

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setting up viz Enrich widget #60

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12 changes: 11 additions & 1 deletion js/widget.js
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Original file line number Diff line number Diff line change
Expand Up @@ -96,21 +96,31 @@ export const render_matrix_new = async ({ model, el }) => {

}

export const render_enrich = async ({model, el}) => {
const gene_list = model.get('gene_list')

console.log('gene_list', gene_list)
}

export const render = async ({ model, el }) => {

const componentType = model.get("component");

console.log('componentType', componentType)

switch (componentType) {
case "Landscape":
render_landscape({ model, el });
break;
case "Matrix":
render_matrix_new({ model, el });
break;
case "Enrich":
render_enrich({ model, el});
break;
default:
throw new Error(`Unknown component type: ${componentType}`);
}
};


export default { render, landscape_ist, landscape_sst, matrix_viz };
4 changes: 4 additions & 0 deletions src/celldega/clust/__init__.py
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Expand Up @@ -57,6 +57,10 @@
import ipywidgets as widgets
import statsmodels.stats.multitest as smm


def enrich(gene_list):
print('gene_list', gene_list)

def hc(df, filter_N_top=None, norm_col='total', norm_row='zscore'):

"""
Expand Down
4 changes: 2 additions & 2 deletions src/celldega/viz/__init__.py
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Expand Up @@ -2,7 +2,7 @@
Module for visualization
"""

from .widget import Landscape, Matrix
from .widget import Landscape, Matrix, Enrich
from ipywidgets import jslink, HBox, Layout

def landscape_matrix(landscape, mat, width='600px', height='700px'):
Expand Down Expand Up @@ -34,4 +34,4 @@ def landscape_matrix(landscape, mat, width='600px', height='700px'):

display(widgets_side_by_side)

__all__ = ["Landscape", "Matrix", 'landscape_matrix']
__all__ = ['Landscape', 'Matrix', 'landscape_matrix', 'Enrich']
15 changes: 15 additions & 0 deletions src/celldega/viz/widget.py
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Expand Up @@ -99,6 +99,21 @@ class Matrix(anywidget.AnyWidget):
height = traitlets.Int(600).tag(sync=True)
click_info = traitlets.Dict({}).tag(sync=True)

class Enrich(anywidget.AnyWidget):
"""

"""

_esm = pathlib.Path(__file__).parent / "../static" / "widget.js"
_css = pathlib.Path(__file__).parent / "../static" / "widget.css"

value = traitlets.Int(0).tag(sync=True)

component = traitlets.Unicode("Enrich").tag(sync=True)

# gene list
gene_list = traitlets.List([]).tag(sync=True)


class MatrixNew(anywidget.AnyWidget):
_esm = pathlib.Path(__file__).parent / "../static" / "widget.js"
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