Problems about ploting

[HelloWorldLTY]

Hi, I found an error from the tutorial:

Moreover, the final output with deconvolution result does not display in my jupyter notebook, is it normal? Thanks a lot.

[gaddamshreya1]

Hi @HelloWorldLTY ,

Thank you for using Tangram and bringing this to our attention. Could you let us know the versions of Tangram and Seaborn you're using?

[omarhalawa3301]

Hi, I have been running into the first issue (tg.plot_auc() error) as well with tg 1.0.4 and seaborn 0.13.2. I looked into the repo code, and this specific (and deprecated for newer versions of seaborn) seaborn.scatterplot() syntax seems to only be used in this once odd instance. Aside from tg.plot_auc() calls, both tutorial notebooks run perfectly fine.

I've added below the .yaml for the conda environment I am using with the explicit versions I need. I understand that these may not be the exact package versions that you expect for tg 1.0.4, but the current pip dependencies do not specify any specific versions, and so I believe this could be an easy fix on your end to resolve this issue for myself and others like the original issue poster with something like a simple change of the code to:

sns.scatterplot(data=pd.DataFrame({'x': xs, 'y': ys}), alpha=0.5)

Please let me know, and thank you.

YAML:

name: tg_env
channels:
  - conda-forge
dependencies:
  - python=3.11
  - pip
  - pip:
      - squidpy==1.4.1
      - jupyterlab==3.6.3
      - matplotlib==3.7.2
      - numpy==1.24.3
      - pandas==2.2.0
      - scanpy==1.9.8
      - scipy==1.11.1
      - scikit-learn==1.3.0
      - seaborn==0.13.2
      - tangram-sc==1.0.4
      - tqdm==4.65.0