Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

predict.py #228

Open
BERICP01 opened this issue Jun 24, 2024 · 0 comments
Open

predict.py #228

BERICP01 opened this issue Jun 24, 2024 · 0 comments

Comments

@BERICP01
Copy link

BERICP01 commented Jun 24, 2024 •
edited
Loading

Hello,

I was wondering why some output files from predict.py have been removed in the last versions of the script.

#Initialize Prediction files
pred_file_full = os.path.join(args.outdir, "EnhancerPredictionsFull.txt") REMOVED
pred_file_slim = os.path.join(args.outdir, "EnhancerPredictions.txt") REMOVED
pred_file_bedpe = os.path.join(args.outdir, "EnhancerPredictions.bedpe") REMOVED
all_pred_file_expressed = os.path.join(args.outdir, "EnhancerPredictionsAllPutative.txt.gz")
all_pred_file_nonexpressed = os.path.join(args.outdir, "EnhancerPredictionsAllPutativeNonExpressedGenes.txt.gz")
variant_overlap_file = os.path.join(args.outdir, "EnhancerPredictionsAllPutative.ForVariantOverlap.shrunk150bp.txt.gz")
all_putative_list = []

Thanks
Pietro
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@BERICP01