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‎.nojekyll

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‎contents/sst-gdal.html

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<div class="cell">
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<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="fu">edl_netrc</span>()</span>
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<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>urls <span class="ot">&lt;-</span> <span class="fu">edl_search</span>(<span class="at">short_name =</span> <span class="st">"MUR-JPL-L4-GLOB-v4.1"</span>,</span>
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<span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a> <span class="at">temporal =</span> <span class="fu">c</span>(<span class="st">"2019-01-01"</span>, <span class="st">"2019-01-31"</span>))</span>
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<span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a> <span class="at">temporal =</span> <span class="fu">c</span>(<span class="st">"2020-01-01"</span>, <span class="st">"2021-12-31"</span>))</span>
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<span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a></span>
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<span id="cb2-5"><a href="#cb2-5" aria-hidden="true" tabindex="-1"></a></span>
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<span id="cb2-6"><a href="#cb2-6" aria-hidden="true" tabindex="-1"></a>vrt <span class="ot">&lt;-</span> <span class="cf">function</span>(url) {</span>
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</div>
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<div class="cell">
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<div class="sourceCode cell-code" id="cb5"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a>extent <span class="ot">=</span> <span class="fu">list</span>(<span class="at">left=</span><span class="sc">-</span><span class="dv">93</span>, <span class="at">right=</span><span class="sc">-</span><span class="dv">76</span>, <span class="at">bottom=</span><span class="dv">41</span>, <span class="at">top=</span><span class="dv">49</span>,</span>
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<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a> <span class="at">t0=</span><span class="st">"2019-01-01"</span>, <span class="at">t1=</span><span class="st">"2019-01-31"</span>)</span>
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<span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a> <span class="at">t0=</span><span class="st">"2020-01-01"</span>, <span class="at">t1=</span><span class="st">"2021-12-31"</span>)</span>
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<span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a></span>
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<span id="cb5-4"><a href="#cb5-4" aria-hidden="true" tabindex="-1"></a>bench<span class="sc">::</span><span class="fu">bench_time</span>({</span>
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<span id="cb5-5"><a href="#cb5-5" aria-hidden="true" tabindex="-1"></a> data_gd <span class="sc">|&gt;</span> </span>
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</div>
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<div class="cell-output cell-output-stdout">
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<pre><code>process real
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9.31s 3.42m </code></pre>
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24.2s 14.5m </code></pre>
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</div>
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‎search.json

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"href": "contents/sst-gdal.html",
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"title": "",
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"section": "",
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"text": "#remotes::install_github(\"boettiger-lab/earthdatalogin\")\nlibrary(earthdatalogin)\n\n\nedl_netrc()\nurls &lt;- edl_search(short_name = \"MUR-JPL-L4-GLOB-v4.1\",\n temporal = c(\"2019-01-01\", \"2019-01-31\"))\n\n\nvrt &lt;- function(url) {\n prefix &lt;- \"vrt://NETCDF:/vsicurl/\"\n suffix &lt;- \":analysed_sst?a_srs=OGC:CRS84&a_ullr=-180,90,180,-90\"\n paste0(prefix, url, suffix)\n}\n\n\nlibrary(gdalcubes)\ngdalcubes_options(parallel = parallel::detectCores()*2)\n\n\nurl_dates &lt;- as.Date(gsub(\".*(\\\\d{8})\\\\d{6}.*\", \"\\\\1\", urls), format=\"%Y%m%d\")\ndata_gd &lt;- gdalcubes::stack_cube(vrt(urls), datetime_values = url_dates)\n\n\nextent = list(left=-93, right=-76, bottom=41, top=49,\n t0=\"2019-01-01\", t1=\"2019-01-31\")\n\nbench::bench_time({\n data_gd |&gt; \n gdalcubes::crop(extent) |&gt; \n aggregate_time(dt=\"P1M\", method=\"sd\") |&gt; \n plot(col = viridisLite::viridis(10))\n})\n\n\n\n\nprocess real \n 9.31s 3.42m"
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"text": "#remotes::install_github(\"boettiger-lab/earthdatalogin\")\nlibrary(earthdatalogin)\n\n\nedl_netrc()\nurls &lt;- edl_search(short_name = \"MUR-JPL-L4-GLOB-v4.1\",\n temporal = c(\"2020-01-01\", \"2021-12-31\"))\n\n\nvrt &lt;- function(url) {\n prefix &lt;- \"vrt://NETCDF:/vsicurl/\"\n suffix &lt;- \":analysed_sst?a_srs=OGC:CRS84&a_ullr=-180,90,180,-90\"\n paste0(prefix, url, suffix)\n}\n\n\nlibrary(gdalcubes)\ngdalcubes_options(parallel = parallel::detectCores()*2)\n\n\nurl_dates &lt;- as.Date(gsub(\".*(\\\\d{8})\\\\d{6}.*\", \"\\\\1\", urls), format=\"%Y%m%d\")\ndata_gd &lt;- gdalcubes::stack_cube(vrt(urls), datetime_values = url_dates)\n\n\nextent = list(left=-93, right=-76, bottom=41, top=49,\n t0=\"2020-01-01\", t1=\"2021-12-31\")\n\nbench::bench_time({\n data_gd |&gt; \n gdalcubes::crop(extent) |&gt; \n aggregate_time(dt=\"P1M\", method=\"sd\") |&gt; \n plot(col = viridisLite::viridis(10))\n})\n\n\n\n\nprocess real \n 24.2s 14.5m"
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