alphaflow not working -- keyError: 'ptm'

[marinaort]

I had been running alphaflow in an environment for the last months and it was working fine. This weekend I had not been able to run it. I have been getting this error:

[INFO] Loading the model
[INFO] Model has been loaded
0%| | 0/50 [00:08<?, ?it/s]
Traceback (most recent call last):
File "/GIT/alphaflow/predict.py", line 175, in
main()
File "/alphaflow/lib/python3.9/site-packages/torch/autograd/grad_mode.py", line 27, in decorate_context
return func(*args, **kwargs)
File "/GIT/alphaflow/predict.py", line 129, in main
dat = {col: dat[col] for col in cols}
File "/GIT/alphaflow/predict.py", line 129, in
dat = {col: dat[col] for col in cols}
KeyError: 'ptm'

Another issue I found while running alphaflow is that in the file templates.py in lines 88 and 89 it is ussing np.object but a warning is displayed because in newer versions of numpy this doesn't exists and it recommends to change that lines from np.object to object.

[bjing2016]

Hi Marina,
It looks like there was an issue with the most recent PR --- could you pull and see if it's working now?