Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Checking all the URLs still work #6

Closed
peterjc opened this issue May 8, 2016 · 8 comments
Closed

Checking all the URLs still work #6

peterjc opened this issue May 8, 2016 · 8 comments

Comments

@peterjc
Copy link
Member

peterjc commented May 8, 2016

We need to spider the site and find any broken internal or external links.
greed2411 added a commit to greed2411/biosql.github.io that referenced this issue Jun 20, 2017
@greed2411
Add files via upload
355bf22 
Dealing the issues biosql#6 and biosql#4
@greed2411 greed2411 mentioned this issue Jun 20, 2017
Closed
@greed2411
Copy link
Contributor

Hi. I'm new to open source but still thought this thing I could try, I want to help and try to learn, I've proposed a PR with results.md in it which has the list of broken links in the domain

link for PR : #10 @peterjc

@peterjc
Copy link
Member Author

peterjc commented Jun 20, 2017

Here is the report from @jaiimmortal:

Broken links of BioSQL

Processed links: 117 / 117
Finished in: 3 minutes 13 seconds
Depth = 10

Covering issues :

Broken links (10)

  1. http://biosql.org/wiki/Main_Page
  1. http://biosql.org/wiki/Releases
  1. http://biosql.org/wiki/Enhancement_Requests
  1. http://biosql.org/wiki/BioJava_BioSQL_ORM
  1. http://biosql.org/wiki/PhyloDBSchema
  1. https://biosql.org/wiki/Main_Page
  1. https://biosql.org/wiki/Releases
  1. https://biosql.org/wiki/Enhancement_Requests
  1. https://biosql.org/wiki/BioJava_BioSQL_ORM
  1. https://biosql.org/wiki/PhyloDBSchema

@peterjc
Copy link
Member Author

peterjc commented Jun 20, 2017 •
edited
Loading

The mailing lists are no longer available on the main server, that likely used to have a redirection - which we may be able to reinstate? CC @hlapp

Anyway, to fix http://biosql.org/wiki/Main_Page edit https://github.com/biosql/biosql.github.io/blob/master/wiki/Main_Page.md and for example replace http://open-bio.org/mailman/listinfo/biosql-l with
http://mailman.open-bio.org/mailman/listinfo/biosql-l

Many of these broken links are to our old SVN server, which is no longer used. Both BioSQL and BioJava are now on GitHub and these equivalent links would be somewhere under https://github.com/biosql/biosql and https://github.com/biojava/biojava or perhaps https://github.com/biojava/biojava-legacy

@greed2411 greed2411 mentioned this issue Jun 20, 2017
Merged
@greed2411
Copy link
Contributor

Hello again,
Sorry for earlier, but the actual missing links are:

  1. http://biosql.org/wiki/Main_Page

[404] http://open-bio.org/mailman/listinfo/biosql-l
[404] http://open-bio.org/mailman/listinfo/biosql-guts-l

  1. http://biosql.org/wiki/Releases

[ConnectFailure] http://code.open-bio.org/svnweb/index.cgi/biosql/browse/biosql-schema/trunk/doc/biopython
[ConnectFailure] http://code.open-bio.org/svnweb/index.cgi/biosql/checkout/biosql-schema/trunk/doc/biopython/python_biosql_basic.pdf
[ConnectFailure] http://code.open-bio.org/svnweb/index.cgi/biosql/checkout/biosql-schema/trunk/doc/bj_and_bsql_oracle_howto.htm

  1. http://biosql.org/wiki/Enhancement_Requests

[301 » ConnectFailure] http://www.ebi.ac.uk/embl/Documentation/User_manual/usrman.html#3_4_14
[301 » ConnectFailure] http://www.ebi.ac.uk/embl/Documentation/User_manual/usrman.html#3_4_13

  1. http://biosql.org/wiki/BioJava_BioSQL_ORM

[404] http://biojava.org/wikis/BioJava:BioJavaXDocs/
[ConnectFailure] http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/src/org/biojavax/bio/db/biosql/pg
[ConnectFailure] http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/src/org/biojavax/bio/db/biosql/oracle
[ConnectFailure] http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/src/org/biojavax/bio/db/biosql/mysql
[ConnectFailure] http://code.open-bio.org/svnweb/index.cgi/biojava/browse/biojava-live/trunk/src/org/biojavax/bio/db/biosql/hsqldb

  1. http://biosql.org/wiki/PhyloDBSchema

[NameResolutionFailure] http://rs18.rapidshare.com/files/4441805/Trees_and_Hierarchies_in_SQL_for_Smarties.pdf

@peterjc i apologize once again, these are the actual links, and they have been fixed and here is the PR:
#11

@greed2411 greed2411 mentioned this issue Jun 20, 2017
Open
@hlapp
Copy link
Member

hlapp commented Jun 20, 2017

The mailing lists are no longer available on the main server, that likely used to have a redirection - which we may be able to reinstate? CC @hlapp

I wish I could but the shared hosting server seems to be treating the /mailman prefix special. I can get /mailman2 to redirect properly, but somehow /mailman seems to get intercepted before it gets to the apache redirect directives.

@hlapp
Copy link
Member

hlapp commented Jun 20, 2017

FYI, I submitted a support ticket to Namecheap, but I'm not holding my hopes high that their interception can be disabled.

hlapp pushed a commit that referenced this issue Jun 20, 2017
@greed2411 @hlapp
Proper PR with the changes requested (#11)
ac32489 
Fixes broken links across the site as per #6 and #4

* Updated the broken link for J. Celko, SQL for Smarties
* URL fixes for BioJava_BioSQL_ORM.md
* URL fixes for Enhancement_Requests.md
* URL fixes for Releases.md
* URL fixes for Main_Page.md
* URL fixes for PhyloDBSchema.md
@hlapp
Copy link
Member

hlapp commented Jun 20, 2017

Thanks @jaiimmortal for your help! Much appreciated.

@hlapp hlapp closed this as completed Jun 20, 2017
@greed2411
Copy link
Contributor

@hlapp the pleasure is mine , you don't know how happy I am today , This is the first PR that got merged, I'm grateful.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@hlapp @peterjc @greed2411