feat: Update dependencies to latest versions (#1054)

Author: mencian

bioconda_utils/bioconda_utils-conda_build_config.yaml

@@ -21,7 +21,7 @@ MACOSX_DEPLOYMENT_TARGET:      # [osx]
   - 10.13                      # [osx and x86_64]
 
 bamtools:
-  - "2.5.2"
+  - "2.5.3"
 
 # NOTE: Workaround https://github.com/conda/conda-build/issues/3974 we slightly alter the values
 #       from conda-forge-pinnings here (inserting '.*' or ' ' which should be ignored later on).

bioconda_utils/bioconda_utils-requirements.txt

@@ -6,30 +6,29 @@
 conda-forge-pinning=2024.11.29.12.37.53
 
 # basics
-python=3.10.*
-conda=24.9.*
-conda-libmamba-solver=24.1.*
-conda-build=24.7.*
-conda-index=0.5.*
-conda-package-streaming=0.11.*
+python=3.12.*
+conda=24.11.*
+conda-libmamba-solver=24.9.*
+conda-build=24.9.*
+conda-index=0.6.*
+conda-package-streaming=0.12.*
 mamba=1.5.*
-#boa=0.17.*
 
 argh=0.31.*                   # CLI
 colorlog=6.*                  # Logging
-tqdm=4.66.*                   # Progress monitor
-yaspin=2.*                    #
+tqdm=4.67.*                   # Progress monitor
+yaspin=3.*                    #
 ruamel.yaml=0.18.*            # Recipe YAML parsing
-pyaml=24.04.*                 # Faster YAML parser (deprecate?)
-networkx=3.3.*                # (networkx>3.3 needs python>=3.10)
-pandas=2.2.*                  #
+pyaml=24.12.*                 # Faster YAML parser (deprecate?)
+networkx=3.4.*                # (networkx>3.3 needs python>=3.10)
+pandas=2.3.*                  #
 libblas=*=*openblas           # Avoid large mkl package (pulled in by pandas)
-boltons=24.0.*                #
-jsonschema=4.22.*             # JSON schema verification
+boltons=25.0.*                #
+jsonschema=4.24.*             # JSON schema verification
 jinja2=3.1.*                  #
 
-anaconda-client=1.12.*        # anaconda_upload
-galaxy-tool-util=24.*         # mulled test and container build
+anaconda-client=1.13.*        # anaconda_upload
+galaxy-tool-util=25.*         # mulled test and container build
 involucro=1.1.*               # mulled test and container build
 skopeo=1.15.*                 # docker upload
 findutils                     # find/xargs copy built packages from container
@@ -39,12 +38,12 @@ git=2.*                       # well - git
 regex=2024.*                  #
 
 # asyncio
-aiohttp>=3.10.11              # HTTP lib; pinning to reflect dependabot alert
+aiohttp>=3.12.14              # HTTP lib; pinning to reflect dependabot alert
 aiohttp-jinja2                # jinja2 renderer for aiohttp.web
 aiohttp-session               #
 aiohttp-security              #
 aiofiles=23.*                 # async open
-aioftp=0.22.*                 # FTP lib
+aioftp=0.26.*                 # FTP lib
 backoff=2.2.*                 # retrying of failed API calls
 cachetools=5.3.*              # request caching (NEEDED?)