Problem with python3.11 package for faststructure: TypeError: Cannot convert allelefreq.AlleleFreq to allelefreq.AlleleFreq

[amizeranschi]

Hi @StuntsPT

Thank you very much for your work on updating the faststructure recipe to work with python3!

Unfortunately, I tried testing a recent package (py311h2758d52_6) and I'm running into some errors. This is the command that I'm running:

structure.py -K 2 --input=genotypes_imputed --output=genotypes_imputed_faststructure

And this is the error message:

Traceback (most recent call last):
  File "/home/ubuntu/anaconda/envs/faststructenv/bin/structure.py", line 177, in <module>
    Q, P, other = fastStructure.infer_variational_parameters(G, params['K'], \
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "fastStructure.pyx", line 54, in fastStructure.infer_variational_parameters
TypeError: Cannot convert allelefreq.AlleleFreq to allelefreq.AlleleFreq

Any idea on what could be the issue here? The same command works fine for me with an older bioconda package for python2.7 (py27h6b1b274_5).