File tree
1,734 files changed
+1734
-1734
lines changed- plots
- 3seq
- a5-miseq
- abawaca
- abismal
- abpoa
- abra2
- abundancebin
- abyss
- acms
- ac
- adapterremoval
- addrg
- admixtools
- agc
- age-metasv
- akt
- alcor
- alen
- aletsch
- alevin-fry
- alfred
- aliceasm
- alignlib-lite
- alignoth
- alignstats
- allegro
- allhic
- alphafill
- altair-mf
- amplici
- ampliconsplitter
- amplisim
- ancestry_hmm-s
- ancestry_hmm
- anchorwave
- angsd
- anise_basil
- annembed
- annonars
- apu-label-propagation
- aragorn
- architeuthis
- arcs
- arriba
- artic-porechop
- artic-tools
- art
- asqcan
- assembly-stats
- assemblycomparator2
- assemblyutility
- aster
- atactk
- atac
- ataqv
- athena_meta
- atlas
- atropos
- augustus
- auspice
- autocycler
- axe-demultiplexer
- baitfisher
- bali-phy
- balrog
- bam-readcount
- bambamc
- bamcmp
- bamread
- bamscale
- bamtools
- bamutil
- bandage_ng
- bandage
- bayescode
- bayestyper
- bbknn
- bbmap
- bcalm
- bcftools-gtc2vcf-plugin
- bcftools-liftover-plugin
- bcftools
- bcool
- bcov
- beagle-lib
- bed2gtf
- bedops
- bedtk
- bedtools
- beem-bio
- bellmans-gapc
- bfc
- bgreat
- bifrost
- bigtools
- bindash
- bio-ripser
- bio-unicorn
- bio-vcf
- bioawk
- biobambam
- biobloomtools
- bioconductor-acgh
- bioconductor-acme
- bioconductor-adsplit
- bioconductor-affxparser
- bioconductor-affyio
- bioconductor-affy
- bioconductor-amountain
- bioconductor-amplican
- bioconductor-apeglm
- bioconductor-aseb
- bioconductor-bacon
- bioconductor-bambu
- bioconductor-bamsignals
- bioconductor-batchelor
- bioconductor-bcrank
- bioconductor-bcseq
- bioconductor-bdmmacorrect
- bioconductor-beachmat
- bioconductor-beadarray
- bioconductor-beaddatapackr
- bioconductor-beclear
- bioconductor-bicare
- bioconductor-biobase
- bioconductor-biocneighbors
- bioconductor-biocparallel
- bioconductor-biocsingular
- bioconductor-bioqc
- bioconductor-biostrings
- bioconductor-biovizbase
- bioconductor-bluster
- bioconductor-bnbc
- bioconductor-bsseq
- bioconductor-buscorrect
- bioconductor-bus
- bioconductor-camera
- bioconductor-casper
- bioconductor-celda
- bioconductor-cellnoptr
- bioconductor-chemminer
- bioconductor-chipcomp
- bioconductor-chipseqr
- bioconductor-chipseq
- bioconductor-chromdraw
- bioconductor-chromvar
- bioconductor-citefuse
- bioconductor-clipper
- bioconductor-clusterexperiment
- bioconductor-cn.mops
- bioconductor-cnanorm
- bioconductor-cner
- bioconductor-cntools
- bioconductor-cohcap
- bioconductor-compass
- bioconductor-contibait
- bioconductor-copa
- bioconductor-coregnet
- bioconductor-csar
- bioconductor-csaw
- bioconductor-cytolib
- bioconductor-dada2
- bioconductor-decipher
- bioconductor-deepsnv
- bioconductor-degseq
- bioconductor-delayedarray
- bioconductor-demixt
- bioconductor-descan2
- bioconductor-deseq2
- bioconductor-diffbind
- bioconductor-diffhic
- bioconductor-diffustats
- bioconductor-dirichletmultinomial
- bioconductor-dmrcaller
- bioconductor-dnacopy
- bioconductor-dropletutils
- bioconductor-dss
- bioconductor-ebarrays
- bioconductor-ebcoexpress
- bioconductor-ebimage
- bioconductor-ebseq
- bioconductor-edger
- bioconductor-edge
- bioconductor-enrichmentbrowser
- bioconductor-esatac
- bioconductor-exomecopy
- bioconductor-fastqcleaner
- bioconductor-fastseg
- bioconductor-fgsea
- bioconductor-flagme
- bioconductor-flowclust
- bioconductor-flowcore
- bioconductor-flowfp
- bioconductor-flowmatch
- bioconductor-flowpeaks
- bioconductor-flowsom
- bioconductor-flowworkspace
- bioconductor-gaga
- bioconductor-garfield
- bioconductor-gcrma
- bioconductor-gdsfmt
- bioconductor-genefilter
- bioconductor-genegeneinter
- bioconductor-genenetworkbuilder
- bioconductor-geneselectmmd
- bioconductor-geneticsped
- bioconductor-genextender
- bioconductor-genocn
- bioconductor-genomation
- bioconductor-genomicalignments
- bioconductor-genomicranges
- bioconductor-girafe
- bioconductor-glmgampoi
- bioconductor-globalancova
- bioconductor-gmapr
- bioconductor-gnet2
- bioconductor-gosemsim
- bioconductor-gpa
- bioconductor-graph
- bioconductor-grohmm
- bioconductor-gsva
- bioconductor-hdf5array
- bioconductor-hibag
- bioconductor-hilbertvis
- bioconductor-hmmcopy
- bioconductor-ibmq
- bioconductor-iclusterplus
- bioconductor-illuminaio
- bioconductor-impute
- bioconductor-interactionset
- bioconductor-iranges
- bioconductor-isolde
- bioconductor-kebabs
- bioconductor-limma
- bioconductor-linnorm
- bioconductor-lpsymphony
- bioconductor-maftools
- bioconductor-maigespack
- bioconductor-mait
- bioconductor-makecdfenv
- bioconductor-mapkl
- bioconductor-martini
- bioconductor-massspecwavelet
- bioconductor-mbkmeans
- bioconductor-messina
- bioconductor-metapod
- bioconductor-metaseq
- bioconductor-methylkit
- bioconductor-methylmnm
- bioconductor-methylpipe
- bioconductor-mgsa
- bioconductor-microrna
- bioconductor-minet
- bioconductor-mnem
- bioconductor-monocle
- bioconductor-mosaics
- bioconductor-motifmatchr
- bioconductor-msa2dist
- bioconductor-msa
- bioconductor-mscoreutils
- bioconductor-msnbase
- bioconductor-mspurity
- bioconductor-msstats
- bioconductor-multtest
- bioconductor-mzr
- bioconductor-ncdfflow
- bioconductor-netpathminer
- bioconductor-netresponse
- bioconductor-oligo
- bioconductor-oppar
- bioconductor-pcamethods
- bioconductor-pics
- bioconductor-preprocesscore
- bioconductor-pwalign
- bioconductor-qpgraph
- bioconductor-rbgl
- bioconductor-rbioinf
- bioconductor-rbowtie2
- bioconductor-rbowtie
- bioconductor-rfpred
- bioconductor-rgadem
- bioconductor-rgraphviz
- bioconductor-rhdf5filters
- bioconductor-rhdf5lib
- bioconductor-rhdf5
- bioconductor-rhtslib
- bioconductor-roc
- bioconductor-rots
- bioconductor-rprotobuflib
- bioconductor-rqc
- bioconductor-rsamtools
- bioconductor-rsubread
- bioconductor-rtracklayer
- bioconductor-rtreemix
- bioconductor-s4arrays
- bioconductor-s4vectors
- bioconductor-scmet
- bioconductor-scran
- bioconductor-screpertoire
- bioconductor-scuttle
- bioconductor-seqarray
- bioconductor-seqtools
- bioconductor-shortread
- bioconductor-sincell
- bioconductor-singler
- bioconductor-smap
- bioconductor-snprelate
- bioconductor-snpstats
- bioconductor-sparsearray
- bioconductor-sparsematrixstats
- bioconductor-survcomp
- bioconductor-sva
- bioconductor-switchbox
- bioconductor-ternarynet
- bioconductor-tfbstools
- bioconductor-tissueenrich
- bioconductor-titancna
- bioconductor-tweedeseq
- bioconductor-universalmotif
- bioconductor-variantannotation
- bioconductor-vsn
- bioconductor-xcms
- bioconductor-xvector
- bioconductor-zinbwave
- bioconductor-zlibbioc
- biotradis
- biscuit
- blast-legacy
- blast
- blobtk
- blobtools
- bmfilter
- bmtool
- bowtie2
- bowtie
- bracken
- braker
- breseq
- bte
- btllib
- btrim
- bustools
- bwa-aln-interactive
- bwa-mem2
- bwapy
- bwa
- bx-python
- cactus-gfa-tools
- cactus
- callerpp
- cancerit-allelecount
- cansam
- canu
- cas-offinder
- ccp4srs
- cd-hit
- cdbtools
- ceas
- cell2cell
- cellsnp-lite
- centrifuge-core
- centrifuger
- centrifuge
- centrosome
- cgat-apps
- cgpbigwig
- cgranges
- chain2paf
- chopper
- chromap
- chromograph
- chromsize
- cif-tools
- clair3
- clairvoyante
- clam
- clever-toolkit
- clinod
- clipper
- cloudspades
- clustalo
- clustalw
- clusty
- cmaple
- cmappy
- cnv_facets
- cnvnator
- cobs
- codingquarry
- cogtriangles
- comet-ms
- concoct
- conifer
- consan
- consensify
- consent
- control-freec
- cooltools
- coot-headless
- coprarna
- core-snp-filter
- cortexpy
- cosigt
- coverm
- covtobed
- cpat
- cramino
- crb-blast
- crispresso2
- crispritz
- csubst
- csvtk
- ctc-scite
- ctyper
- cutadapt
- cuttlefish
- cvlr
- cyrcular
- cytoscape
- cyvcf2
- d4binding
- d4tools
- dagchainer
- daisysuite
- damasker
- danbing-tk
- dart
- das_tool
- dashing2
- data_hacks
- dbg2olc
- deacon
- debreak
- decifer
- deepchopper-cli
- deepchopper
- deepmedic
- deeptoolsintervals
- deepvariant
- delly
- deltapd
- delve-bio
- demuxlet
- derna
- devider
- dfam
- dialign-tx
- dialign2
- diamond
- dicey
- digestiflow-cli
- digest
- dinamo
- dinopy
- discasm
- discosnp
- disco
- divvier
- dmox
- dna-nn
- dnadotplot
- dnaio
- dnmtools
- dockq
- domclust
- dragmap
- dsk
- dsrc
- dunovo
- dupsifter
- dwgsim
- dysgu
- easel
- eastr
- ebfilter
- eden
- egglib
- eigensoft
- elprep
- ema
- emboss
- emu-pca
- emvc-2
- enhjoerning
- ensembl-vep
- ensemblcov
- entrez-direct
- eoulsan
- epa-ng
- epic2
- epik
- epydoc
- equirep
- ericscript
- esme_esmf_mpich_4_3_1
- esme_esmf_mvapich_4_0_ofi
- esme_esmf_mvapich_4_0_ucx
- esme_esmf_mvapich_4_0
- esme_hdf5_mpich_4_3_1
- esme_hdf5_mvapich_4_0_ofi
- esme_hdf5_mvapich_4_0_ucx
- esme_hdf5_mvapich_4_0
- esme_mpich_4_3_1
- esme_mvapich_4_0_ofi
- esme_mvapich_4_0_ucx
- esme_mvapich_4_0
- esme_netcdf-c_mvapich_4_0_ofi
- esme_netcdf-c_mvapich_4_0_ucx
- esme_netcdf-c_mvapich_4_0
- esme_netcdf-fortran_mpich_4_3_1
- esme_netcdf-fortran_mvapich_4_0_ofi
- esme_netcdf-fortran_mvapich_4_0
- esme_omb_mpich_4_3_1
- esme_pio_mpich_4_3_1
- esme_pio_mvapich_4_0_ofi
- esme_pio_mvapich_4_0_ucx
- esme_pio_mvapich_4_0
- esme_pnetcdf_mpich_4_3_1
- esme_pnetcdf_mvapich_4_0_ofi
- esme_pnetcdf_mvapich_4_0_ucx
- esme_pnetcdf_mvapich_4_0
- esmre
- espresso
- eviann
- evidencemodeler
- exonerate
- expam
- expansionhunterdenovo
- expansionhunter
- extract-sv-reads
- extract_fullseq
- extracthifi
- f5c
- fa-lint
- fairy
- falco
- famsa
- famseq
- faqcs
- fast-edit-distance
- fasta3
- fasta_ushuffle
- fastahack
- fastani
- fasten
- fastga
- fastk
- fastlin
- fastme
- fastobo
- fastool
- fastplong
- fastp
- fastq-and-furious
- fastq-filter
- fastq-scan
- fastq-tools
- fastq_utils
- fastqc-rs
- fastqsplitter
- fastqtk
- faststructure
- fasttree
- fastx_toolkit
- fc
- fermi2
- fibertools-rs
- fido
- fiji
- filtlong
- finemap
- flash2
- flexbar
- flexiplex
- flye
- fmlrc2
- fmsi
- foldcomp
- folddisco
- foldmason
- foldseek
- footprint
- fqgrep
- fqtk
- fqtools
- fq
- frag_gene_scan_rs
- fraggenescan
- freebayes
- fusion-inspector
- fusioncatcher-seqtk
- fwdpp
- fwdpy11
- gadem
- gafpack
- gambitcore
- gambit
- gangstr
- ganon
- gap2seq
- gappa
- gargammel
- gb-io
- gb_taxonomy_tools
- gcen
- gctb
- gecko
- gecode
- gemini
- genbank
- gencore
- genefuse
- genepop
- generax
- genform
- genmap
- genodsp
- genomedata
- genometools-genometools
- gentle
- get_homologues
- get_mnv
- gfaffix
- gfainject
- gfastats
- gfatools
- gffcompare
- gffread
- ggcat
- ghostx
- ghostz
- gia
- gimmemotifs-minimal
- gimmemotifs
- glimmerhmm
- glnexus
- gmap
- gnali
- gndiff
- gnparser
- goalign
- gocr
- gofasta
- goleft
- gotohscan
- gotree
- grabix
- graphclust-wrappers
- graphembed
- graphmap
- graphtyper
- grenedalf
- grepq
- gretl
- gridss
- grid
- groot
- group_humann2_uniref_abundances_to_go
- grz-check
- gsalign
- gseapy
- gsearch
- gtdbtk
- gtfsort
- gubbins
- guidescan
- gustaf
- gvcf2coverage
- gw
- gxf2bed
- gzrt
- hail
- hairsplitter
- hal2vg
- hapcut2
- haplomap
- haproh
- harpy
- hcluster_sg
- hesslab-gambit
- hhsuite
- hi-corrector
- hic-straw
- hictkpy
- hictk
- hifiasm_meta
- hifiasm
- hisat-3n
- hisat2
- hits
- hmmcopy
- hmmer2
- hmmer
- hmnillumina
- homer
- htsbox
- htseq
- htslib
- htstream
- hubward-all
- hyphy
- iced
- idba
- idemuxcpp
- idr
- igblast
- igua
- illumina-interop
- impg
- infernal
- inmoose
- insurveyor
- intarna
- iow
- ipk
- iqtree
- irfinder
- irf
- ir
- isoseq3
- ivar
- jarvis3
- jarvis
- jcvi
- k8
- kaiju
- kakscalculator2
- kalign2
- kalign3
- kallisto
- kanpig
- karect
- kbo-cli
- kcounter
- khmer
- kid
- kled
- kma
- kmcp
- kmc
- kmer-db
- kmer-jellyfish
- kmercamel
- kmergenie
- kmertools
- knotinframe
- kractor
- kraken-ea
- kraken2
- krakenuniq
- kraken
- krbalancing
- krepp
- kronik
- kyber
- lastz
- last
- leviosam2
- lexicmap
- lib-pod5
- libbigwig
- libccp4
- libcifpp
- libdivsufsort
- libgenome
- libgff
- libgtextutils
- libidn
- libmaus2
- libmems
- libmuscle
- libopenms
- libpdb-redo
- libsbml
- libsequence
- libssw
- libstatgen
- liftover
- lightassembler
- lighter
- links
- livekraken
- locityper
- lofreq
- longcalld
- longgf
- longphase
- longreadsum
- longshot
- lorax
- lra
- lrez
- lrge
- lrzip
- ls-gkm
- lumpy-sv-minimal
- lz-ani
- macs2
- macs3
- maf2synteny
- mafft
- mageck
- magmax
- manta
- mantis-msi2
- mapad
- mapdamage2
- mapdia
- mapping-iterative-assembler
- mappy
- mapsplice
- mashmap
- mashtree
- mash
- mason
- matam
- matchtigs
- mauve
- maverick
- mawk
- maxbin2
- maxentpy
- maxentscan
- maxit
- maxquant
- mbgc
- mbg
- mbuffer
- mcl
- mcscanx
- mdasim
- mdust
- mea
- medaka
- megahit
- megalodon
- megan
- megapath-nano
- mehari
- meme
- memopair
- meraculous
- merfishtools
- merquryfk
- meryl
- meta-neuro
- metabat2
- metabuli
- metacache
- metadmg
- metaeuk
- metagenome-atlas
- metagraph
- metamdbg
- metameta
- metanovo
- metasnv
- metavelvet-annois
- metawatt
- metawrap
- methpipe
- methyldackel
- metilene
- mgems
- mgikit
- mgkit
- midas
- miniasm
- minia
- minigraph
- minimap2
- minimod
- miniprot-boundary-scorer
- miniprot
- minisplice
- miranda
- mmcif
- mmdb2
- mmft
- mmseqs2-server
- mmseqs2
- moabs
- moments
- moods
- mosdepth
- mothur
- mp-est
- mpa-portable
- mrbayes
- mrtrix3
- ms-entropy
- ms2pip
- ms2rescore-rs
- msisensor-pro
- msisensor
- msweep
- mtbseq
- mtm-align
- mugsy
- mumemto
- mummer4
- mummer
- mupbwt
- muscle
- muse
- mustang
- mutscan
- mutyper
- mykrobe
- n50
- nafcodec
- namfinder
- nanoblaster
- nanoq
- nanovar
- ncbi-amrfinderplus
- ncbi-ngs-sdk
- ncbi-stxtyper
- ncbi-vdb
- ncls
- necat
- nedbit-features-calculator
- needletail
- neffy-cli
- neffy
- newmap
- nextalign
- nextclade2
- nextclade
- nextpolish2
- nextpolish
- ngmerge
- ngmlr
- ngs-bits
- ngs-disambiguate
- ngscheckmate
- ngseqbasic
- ninja-nj
- nohuman
- nonpareil
- nordic
- nrpys
- nseg
- ntcard
- ntedit
- nthits
- ntsm
- ntstat
- ntsynt
- nullarbor
- oarfish
- oases
- odgi
- oligoarrayaux
- oligomap
- oncotator
- ont-modkit
- ont_vbz_hdf_plugin
- ontime
- openms-thirdparty
- openms
- openstructure
- optitype
- orfanage
- orthanq
- paf2chain
- pairix
- pairsnp
- pairtools
- paml
- panacus
- pandaseq
- panman
- panphlan
- paraclu
- parafly
- parasail-python
- parasail
- parascopy
- pasta
- pb-assembly
- pb-falcon
- pbaa
- pbccs
- pbcopper
- pbgcpp
- pbgzip
- pblaa
- pblat
- pbpigeon
- pbsim3
- pbsim
- pbsv
- pcangsd
- pcaone
- pdb2fasta
- pdbx
- pear
- ped_parser
- pegasusio
- pepnovo
- pepsirf
- perbase
- percolator
- perl-aceperl
- perl-acme-damn
- perl-algorithm-cluster
- perl-alien-build
- perl-alien-libxml2
- perl-bio-bigfile
- perl-bio-db-hts
- perl-bio-rna-rnaalisplit
- perl-bio-samtools
- perl-bio-tools-run-alignment-tcoffee
- perl-bloom-faster
- perl-cgi
- perl-class-methodmaker
- perl-class-xsaccessor
- perl-config-any
- perl-convert-binary-c
- perl-crypt-openssl-random
- perl-crypt-openssl-rsa
- perl-data-dump
- perl-data-uuid
- perl-datetime-locale
- perl-datetime-timezone
- perl-datetime
- perl-dbd-mysql
- perl-dbd-pg
- perl-dbd-sqlite
- perl-devel-checklib
- perl-devel-size
- perl-digest-sha1
- perl-extutils-cppguess
- perl-file-copy-link
- perl-file-copy-recursive
- perl-filesys-df
- perl-forks
- perl-gdtextutil
- perl-gd
- perl-heap-simple-xs
- perl-hpc-runner-command-plugin-logger-sqlite
- perl-html-parser
- perl-html-tidy
- perl-indirect
- perl-inline-c
- perl-io-compress
- perl-json-create
- perl-json-parse
- perl-json-xs
- perl-list-moreutils-xs
- perl-math-cdf
- perl-math-random
- perl-moosex-app-role-log4perl
- perl-namespace-autoclean
- perl-padwalker
- perl-params-validate
- perl-pbkdf2-tiny
- perl-perl-unsafe-signals
- perl-perlio-gzip
- perl-perlio-utf8_strict
- perl-scalar-util-numeric
- perl-sereal-decoder
- perl-sereal-encoder
- perl-set-intervaltree
- perl-set-object
- perl-socket6
- perl-socket
- perl-sys-info-driver-linux
- perl-template-toolkit
- perl-test-taint
- perl-time-hires
- perl-unicode-map
- perl-unicode-normalize
- perl-unicode-utf8
- perl-url-encode
- perl-want
- perl-xml-libxml
- perl-xml-libxslt
- pfp
- pgenlib
- pggb
- pgrc
- phables
- phasius
- phipack
- phispy
- phylip
- phyloacc
- phylodm
- phyml
- phynder
- physher
- pigpen
- piler-cr
- pindel
- pipmir
- pisad
- piscem
- pkiss
- plant_tribes_kaks_analysis
- plass
- platypus-conquistador
- plek
- plink
- poa
- polypolish
- polystest
- popdel
- popins2
- poplddecay
- poppunk
- porechop_abi
- porechop
- portcullis
- poseidon-trident
- postmaster
- ppanggolin
- pplacer
- prank
- predictosaurus
- preseq
- primer3-py
- primer3
- prinseq-plus-plus
- privateer
- probamconvert
- probconsrna
- probcons
- proda
- prodigal-gv
- prodigal
- promod3
- prophyle
- prosampler
- prot-scriber
- proteinortho
- psdm
- pseqsid
- psipred
- psirc
- psmc
- pullseq
- purge_dups
- py2bit
- py_fasta_validator
- pyabpoa
- pybbi
- pybdei
- pybedlite
- pybedtools
- pybigtools
- pybigwig
- pybwa
- pycoverm
- pydustmasker
- pyfamsa
- pyfastani
- pyfastx
- pygtftk
- pyhmmer
- pyjess
- pylibseq
- pymisc-utils
- pyopal
- pyopenms
- pyprophet
- pyrle
- pyrodigal
- pysamstats
- pysam
- pyskani
- pyslow5
- pyspoa
- pytabix
- pytantan
- python-bioext
- python-edlib
- python-hyphy-python
- python-msgpack
- pytrf
- pytrimal
- pyvcf3
- quaqc
- quast
- quicksect
- quicktree
- r-azimuth
- r-biodb
- r-bpcells
- r-cobrar
- r-crbhits
- r-dartr
- r-facets
- r-fateid
- r-ggbiplot
- r-grain
- r-grbase
- r-hemdag
- r-leidenbase
- r-liger
- r-lisi
- r-lncpipereporter
- r-metacoder
- r-mspbwt
- r-msqrob
- r-phewas
- r-presto
- r-quilt
- r-raceid
- r-restfulr
- r-rrbgen
- r-saige
- r-shaman
- r-sigminer
- r-signac
- r-spp
- r-stitch
- r-umi4c
- r-wgcna
- r-xcell
- racon
- radtk
- rad
- randfold
- rapidnj
- raptor
- rascaf
- rasusa
- ratatosk
- raven-assembler
- raxml-ng
- raxml
- razers3
- rcorrector
- rdeval
- rdock
- readfq
- recon
- reduce
- reffinder
- regtools
- relion
- remurna
- repaq
- reparation_blast
- repeatafterme
- repeatscout
- revbayes
- reviewer
- rfmix
- rhocall
- riblast
- ribotish
- rmats
- rmblast
- rnalien
- rnashapes
- rnasketch
- rnastructure
- ropebwt2
- ropebwt3
- rotate
- rpbp
- rpsbproc
- rscape
- rseg
- rsem
- rseqc
- rtk
- rukki
- rust-bio-tools
- rust-gtars
- rust-ncbitaxonomy
- rust-proseg
- rustybam
- sage-proteomics
- sainsc
- salmon
- sam2pairwise
- sambamba
- samblaster
- samstrip
- samsum
- samtools
- sansa
- sap
- savvy
- scalpel
- scanindel
- scoring-matrices
- scripps-msms
- sdm
- sdust
- seg-suite
- segemehl
- segul
- seismic-rna
- selam
- selene-sdk
- sentieon
- sepp
- seq-hasher
- seq-seq-pan
- seqan_tcoffee
- seqbuster
- seqfu
- seqkit
- seqlib
- seqsizzle
- seqtk
- sequali
- sequencetools
- seqwish
- sfld
- sgdemux
- short-read-connector
- sibeliaz
- sickle-trim
- sickle
- simlord
- simpleaf
- sistr_cmd
- ska2
- skani
- ska
- skder
- skesa
- slamdunk
- slclust
- slivar
- slow5tools
- smakcr
- smcpp
- smeg
- smithwaterman
- smudgeplot
- snap-aligner
- snap
- sneep
- snp-dists
- snp-pileup
- snp-sites
- snpick
- snpiphy
- soapdenovo-trans
- softsv
- somaticseq
- sonicparanoid
- sorted_nearest
- sortmerna
- spacedust
- spacepharer
- spades
- spaln
- sparc
- sparseassembler
- spectacle
- spectral_hk
- spectrassembler
- splash
- splitcode
- spoa
- spring
- squigulator
- squizz
- sra-tools
- srnamapper
- srprism
- ssm
- stacks
- staden_io_lib
- starcode
- star
- stereogene
- strainge
- strainr2
- strangepg
- strawc
- strdust
- strelka
- stringtie
- strobealign
- sts-smctc
- subread
- suchtree
- superintervals
- survivor
- svaba
- svdb
- svmlight
- svseq2
- svtk
- swarm
- sylph
- syri
- t-coffee
- t1k
- tabixpp
- tagbam
- tagger
- tantan
- tassel
- taxator-tk
- taxmapper
- taxonkit
- taxonomy
- taxor
- tbl2asn-forever
- tdrmapper
- teloscope
- tepid
- tgsgapcloser
- theta2
- tiddit
- tidk
- tidyp
- tigmint
- tinker
- tmalign
- tn93
- tobias
- tortoize
- tpmcalculator
- tr-trimmer
- tracs
- tracy
- transannot
- transanno
- treesapp
- treeswirl
- trf
- trgt
- tribal
- trimal
- trinity
- trnascan-se
- trust4
- tssv
- tttrlib
- twilight
- twopaco
- uchime
- ucsc-addcols
- ucsc-ameme
- ucsc-autodtd
- ucsc-autosql
- ucsc-autoxml
- ucsc-avecols
- ucsc-axtchain
- ucsc-axtsort
- ucsc-axtswap
- ucsc-axttomaf
- ucsc-axttopsl
- ucsc-bamtopsl
- ucsc-bedclip
- ucsc-bedcommonregions
- ucsc-bedgeneparts
- ucsc-bedgraphpack
- ucsc-bedgraphtobigwig
- ucsc-bedintersect
- ucsc-bedpileups
- ucsc-bedremoveoverlap
- ucsc-bedrestricttopositions
- ucsc-bedsort
- ucsc-bedtobigbed
- ucsc-bedtogenepred
- ucsc-bedtopsl
- ucsc-bedweedoverlapping
- ucsc-bigbedinfo
- ucsc-bigbednameditems
- ucsc-bigbedsummary
- ucsc-bigbedtobed
- ucsc-bigmaftomaf
- ucsc-bigpsltopsl
- ucsc-bigwigaverageoverbed
- ucsc-bigwigcat
- ucsc-bigwigcluster
- ucsc-bigwigcorrelate
- ucsc-bigwiginfo
- ucsc-bigwigmerge
- ucsc-bigwigsummary
- ucsc-bigwigtobedgraph
- ucsc-bigwigtowig
- ucsc-blasttopsl
- ucsc-blat
- ucsc-catdir
- ucsc-catuncomment
- ucsc-chainantirepeat
- ucsc-chainfilter
- ucsc-chainmergesort
- ucsc-chainnet
- ucsc-chainprenet
- ucsc-chainsort
- ucsc-chainsplit
- ucsc-chainstitchid
- ucsc-chainswap
- ucsc-chaintoaxt
- ucsc-chaintopslbasic
- ucsc-chaintopsl
- ucsc-checkagpandfa
- ucsc-checkhgfindspec
- ucsc-chopfalines
- ucsc-coltransform
- ucsc-countchars
- ucsc-crtreeindexbed
- ucsc-crtreesearchbed
- ucsc-dbsnoop
- ucsc-expmatrixtobarchartbed
- ucsc-faalign
- ucsc-facmp
- ucsc-facount
- ucsc-fafiltern
- ucsc-fafilter
- ucsc-fafrag
- ucsc-fanoise
- ucsc-faonerecord
- ucsc-fapolyasizes
- ucsc-farandomize
- ucsc-farc
- ucsc-fasize
- ucsc-fasomerecords
- ucsc-fasplit
- ucsc-fastqstatsandsubsample
- ucsc-fastqtofa
- ucsc-fatofastq
- ucsc-fatotab
- ucsc-fatotwobit
- ucsc-fatovcf
- ucsc-fatrans
- ucsc-fetchchromsizes
- ucsc-findmotif
- ucsc-gaptolift
- ucsc-genepredcheck
- ucsc-genepredtobed
- ucsc-genepredtobiggenepred
- ucsc-genepredtogtf
- ucsc-gensub2
- ucsc-gff3togenepred
- ucsc-gff3topsl
- ucsc-gmtime
- ucsc-gtftogenepred
- ucsc-headrest
- ucsc-hgbbidblink
- ucsc-hgfakeagp
- ucsc-hggcpercent
- ucsc-hgloadbed
- ucsc-hgloadsqltab
- ucsc-hgspeciesrna
- ucsc-hgsqldump
- ucsc-htmlcheck
- ucsc-ixixx
- ucsc-lavtoaxt
- ucsc-lavtopsl
- ucsc-liftover
- ucsc-linestora
- ucsc-localtime
- ucsc-mafaddirows
- ucsc-mafaddqrows
- ucsc-maffilter
- ucsc-mafmefirst
- ucsc-maforder
- ucsc-mafranges
- ucsc-mafsinregion
- ucsc-mafspecieslist
- ucsc-mafspeciessubset
- ucsc-mafsplit
- ucsc-maftoaxt
- ucsc-maftobigmaf
- ucsc-maftopsl
- ucsc-maskoutfa
- ucsc-matrixclustercolumns
- ucsc-matrixmarkettotsv
- ucsc-matrixnormalize
- ucsc-matrixtobarchartbed
- ucsc-mktime
- ucsc-netchainsubset
- ucsc-netfilter
- ucsc-netsplit
- ucsc-netsyntenic
- ucsc-nettoaxt
- ucsc-nettobed
- ucsc-newprog
- ucsc-newpythonprog
- ucsc-nibfrag
- ucsc-nibsize
- ucsc-oligomatch
- ucsc-overlapselect
- ucsc-parafetch
- ucsc-parahubstop
- ucsc-parahub
- ucsc-paranodestart
- ucsc-paranodestatus
- ucsc-paranodestop
- ucsc-paranode
- ucsc-parasol
- ucsc-parasync
- ucsc-paratestjob
- ucsc-para
- ucsc-pslcat
- ucsc-pslcdnafilter
- ucsc-pslcheck
- ucsc-psldropoverlap
- ucsc-pslfilter
- ucsc-pslhisto
- ucsc-pslmappostchain
- ucsc-pslmap
- ucsc-pslmrnacover
- ucsc-pslpairs
- ucsc-pslpartition
- ucsc-pslpostarget
- ucsc-pslpretty
- ucsc-pslprottornacoords
- ucsc-pslrc
- ucsc-pslrecalcmatch
- ucsc-pslreps
- ucsc-pslscore
- ucsc-pslselect
- ucsc-pslsomerecords
- ucsc-pslsortacc
- ucsc-pslsort
- ucsc-pslsplicejunctions
- ucsc-pslsplitontarget
- ucsc-pslstats
- ucsc-pslswap
- ucsc-psltobed
- ucsc-psltobigpsl
- ucsc-psltochain
- ucsc-psltopslx
- ucsc-pslxtofa
- ucsc-qacagplift
- ucsc-qactoqa
- ucsc-qactowig
- ucsc-qatoqac
- ucsc-randomlines
- ucsc-ratolines
- ucsc-ratotab
- ucsc-rmfadups
- ucsc-rowstocols
- ucsc-spacedtotab
- ucsc-splitfilebycolumn
- ucsc-splitfile
- ucsc-sqltoxml
- ucsc-stringify
- ucsc-subchar
- ucsc-subcolumn
- ucsc-taillines
- ucsc-texthistogram
- ucsc-ticktodate
- ucsc-tolower
- ucsc-toupper
- ucsc-trfbig
- ucsc-twobitdup
- ucsc-twobitinfo
- ucsc-twobitmask
- ucsc-twobittofa
- ucsc-validatemanifest
- ucsc-websync
- ucsc-wigcorrelate
- ucsc-wigtobigwig
- ucsc-wordline
- ucsc-xmlcat
- ucsc-xmltosql
- ultraplex
- ultra
- umi-transfer
- umi_tools
- umis
- unicore
- unicycler
- unifrac-binaries
- unifrac
- unikmer
- unimap
- uniqsketch
- unitig-caller
- usalign
- usearch
- usher
- ushuffle
- vambcore
- vamos
- varfish-server-worker
- varlinker
- varlociraptor
- vawk
- vcf-validator
- vcf2maf
- vcfanno
- vcfbub
- vcfexpress
- vcflatten
- vcflib
- vcftools
- vclust
- velvet
- veryfasttree
- vg
- vidjil-algo
- viennarna
- viguno
- viral_consensus
- virdig
- virulign
- voronota
- vqbg
- vsearch
- vt
- wally
- weeder
- wfa2-lib
- wfmash
- wgatools
- wgfast
- wgsim
- whatshap
- wiggletools
- winnowmap
- wise2
- wtforms-alchemy
- xsd
- xtandem
- xxmotif
- yacht
- yacrd
- yahs
- yak
- yame
- yara
- zerone
- zmwfilter
- zol
Some content is hidden
Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.
1,734 files changed
+1734
-1734
lines changedLines changed: 1 addition & 1 deletion
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
1 |
| - | |
| 1 | + |
Lines changed: 1 addition & 1 deletion
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
1 |
| - | |
| 1 | + |
Lines changed: 1 addition & 1 deletion
Original file line number | Diff line number | Diff line change | |
---|---|---|---|
| |||
1 |
| - | |
| 1 | + |
0 commit comments