Commit 33cec05
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Update bioconda plots and submodule
1 parent 9bc9ae9 commit 33cec05
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4,592 files changed
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lines changed- plots
- 10x_bamtofastq
- 3seq
- a5-miseq
- aardvark
- abawaca
- abismal
- abpoa
- abra2
- abruijn
- abundancebin
- abyss
- acms
- ac
- adapterremovalfixprefix
- adapterremoval
- addrg
- admixtools
- admixture
- advntr
- aenum
- aeon
- afplot
- afwdist
- agc
- age-metasv
- agg
- akt
- albatradis
- alcor
- alder
- ale-core
- alen
- aletsch
- alevin-fry
- ale
- alfred
- aliceasm
- alignlib-lite
- alignoth
- alignstats
- allegro
- allhic
- alloshp
- alphafill
- altair-mf
- amap
- amaranth-assembler
- amplici
- ampliconsplitter
- amplirust
- amplisim
- amused
- ancestry_hmm-s
- ancestry_hmm
- anchorwave
- andi
- angsd
- anise_basil
- annembed
- annonars
- ansible
- ant
- any2fasta
- apoc
- appspam
- aprfinder
- apu-label-propagation
- aragorn
- arb-bio-devel
- arb-bio-tools
- arb-bio
- archer
- architeuthis
- arcs
- arem
- argh
- argparse
- argutils
- aria2
- ariba
- arriba
- art_modern-openmpi
- art_modern
- artic-porechop
- artic-tools
- art
- asn2gb
- asqcan
- assembly-stats
- assemblycomparator2
- assemblyutility
- aster
- atactk
- atac
- ataqv
- athena_meta
- atlas
- atropos
- augustus
- auspice
- authentict
- autocycler
- autodock-vina
- autodock
- autogrid
- avro
- awscli
- axe-demultiplexer
- axiome
- azure-cli
- b2b-utils
- b2btools
- babappalign
- backports.csv
- backspinpy
- baitfisher
- bali-phy
- balrog
- bam-readcount
- bam2fastx
- bambamc
- bamclipper
- bamcmp
- bamhash
- bammap2
- bamm
- bamread
- bamrescue
- bamscale
- bamslice
- bamstats
- bamtocov
- bamtools
- bamutil
- bandage_ng
- bandage
- barbell
- barriers
- barrnap-python
- bats
- batvi
- bax2bam
- bayescode
- bayestyper
- baypass
- bbknn
- bbmap
- bcalm
- bcbio-rnaseq
- bcbio-variation
- bcbiogff
- bcftools-gtc2vcf-plugin
- bcftools-liftover-plugin
- bcftools
- bcool
- bcov
- beagle-lib
- beagle
- beast2
- bed2gff
- bed2gtf
- bedgovcf
- bedops
- bedtk
- bedtools
- beem-bio
- bellmans-gapc
- bfc
- bgen-cpp
- bgreat
- bgt
- bialign
- bicseq2-norm
- bicseq2-seg
- bifrost
- bigtools
- bindash
- binspreader
- bio-ripser
- bio-unicorn
- bio-vcf
- bioawk
- biobambam
- biobb_amber
- biobb_flexdyn
- biobb_flexserv
- biobb_mem
- bioblend
- biobloomtools
- biocamlib
- bioconductor-abaenrichment
- bioconductor-acgh
- bioconductor-acme
- bioconductor-adacgh2
- bioconductor-adam
- bioconductor-adsplit
- bioconductor-affxparser
- bioconductor-affyio
- bioconductor-affyplm
- bioconductor-affy
- bioconductor-alabaster.base
- bioconductor-alabaster.matrix
- bioconductor-alevinqc
- bioconductor-amaretto
- bioconductor-amountain
- bioconductor-amplican
- bioconductor-analysispageserver
- bioconductor-aneufinder
- bioconductor-anglemania
- bioconductor-apeglm
- bioconductor-arrayexpresshts
- bioconductor-aseb
- bioconductor-asurat
- bioconductor-atlasrdf
- bioconductor-atsnp
- bioconductor-awfisher
- bioconductor-bacon
- bioconductor-bac
- bioconductor-bader
- bioconductor-bags
- bioconductor-bambu
- bioconductor-bamsignals
- bioconductor-bandits
- bioconductor-bandle
- bioconductor-basicstan
- bioconductor-basics
- bioconductor-batchelor
- bioconductor-bayespeak
- bioconductor-bayesspace
- bioconductor-baynorm
- bioconductor-bcrank
- bioconductor-bcseq
- bioconductor-bdmmacorrect
- bioconductor-beachmat.hdf5
- bioconductor-beachmat.tiledb
- bioconductor-beachmat
- bioconductor-beadarray
- bioconductor-beaddatapackr
- bioconductor-beclear
- bioconductor-bgmix
- bioconductor-bgx
- bioconductor-bhc
- bioconductor-bicare
- bioconductor-biobase
- bioconductor-bioc.gff
- bioconductor-biocneighbors
- bioconductor-biocparallel
- bioconductor-biocsingular
- bioconductor-biocsklearn
- bioconductor-biodbhmdb
- bioconductor-biodbnci
- bioconductor-biodb
- bioconductor-bioga
- bioconductor-biomvrcns
- bioconductor-bioqc
- bioconductor-biostrings
- bioconductor-biovizbase
- bioconductor-birewire
- bioconductor-birta
- bioconductor-birte
- bioconductor-bitseq
- bioconductor-blima
- bioconductor-bluster
- bioconductor-bnbc
- bioconductor-bprmeth
- bioconductor-brendadb
- bioconductor-bridge
- bioconductor-browservizdemo
- bioconductor-bsgenome.celegans.ucsc.ce10
- bioconductor-bsgenome.celegans.ucsc.ce6
- bioconductor-bsgenome.dmelanogaster.ucsc.dm3
- bioconductor-bsgenome.drerio.ucsc.danrer7
- bioconductor-bsgenome.ecoli.ncbi.20080805
- bioconductor-bsgenome.hsapiens.ucsc.hg18
- bioconductor-bsgenome.hsapiens.ucsc.hg19
- bioconductor-bsgenome.hsapiens.ucsc.hg38
- bioconductor-bsgenome.mmusculus.ucsc.mm10
- bioconductor-bsgenome.mmusculus.ucsc.mm9
- bioconductor-bsseq
- bioconductor-bufferedmatrixmethods
- bioconductor-bufferedmatrix
- bioconductor-buscorrect
- bioconductor-busparse
- bioconductor-busseq
- bioconductor-bus
- bioconductor-cadra
- bioconductor-calib
- bioconductor-camera
- bioconductor-cancerclass
- bioconductor-cancerinsilico
- bioconductor-cancermutationanalysis
- bioconductor-cardinalio
- bioconductor-casper
- bioconductor-cbea
- bioconductor-cbn2path
- bioconductor-ccfindr
- bioconductor-ccimpute
- bioconductor-celda
- bioconductor-cellarepertorium
- bioconductor-cellbarcode
- bioconductor-cellid
- bioconductor-cellmig
- bioconductor-cellnoptr
- bioconductor-cetf
- bioconductor-cftools
- bioconductor-cgen
- bioconductor-chemmineob
- bioconductor-chemminer
- bioconductor-chihaya
- bioconductor-chimera
- bioconductor-chipcomp
- bioconductor-chipseqr
- bioconductor-chipseq
- bioconductor-chopsticks
- bioconductor-chromdraw
- bioconductor-chromscape
- bioconductor-chromstar
- bioconductor-chromvar
- bioconductor-cigarillo
- bioconductor-cispath
- bioconductor-citefuse
- bioconductor-clipper
- bioconductor-cliquems
- bioconductor-clusterexperiment
- bioconductor-clustirr
- bioconductor-cmap
- bioconductor-cn.farms
- bioconductor-cn.mops
- bioconductor-cnanorm
- bioconductor-cner
- bioconductor-cnordt
- bioconductor-cnorfuzzy
- bioconductor-cnorode
- bioconductor-cnpbayes
- bioconductor-cntools
- bioconductor-cnvtools
- bioconductor-cogaps
- bioconductor-cohcap
- bioconductor-cola
- bioconductor-compass
- bioconductor-contibait
- bioconductor-copa
- bioconductor-coregnet
- bioconductor-cosmiq
- bioconductor-cosnet
- bioconductor-crlmm
- bioconductor-csar
- bioconductor-csaw
- bioconductor-csdr
- bioconductor-cssp
- bioconductor-cydar
- bioconductor-cytokernel
- bioconductor-cytolib
- bioconductor-cytoml
- bioconductor-cytotree
- bioconductor-dada2
- bioconductor-decipher
- bioconductor-decomplexdisease
- bioconductor-decontx
- bioconductor-deds
- bioconductor-deepsnv
- bioconductor-degnorm
- bioconductor-degseq
- bioconductor-delayedarray
- bioconductor-delayedrandomarray
- bioconductor-demixt
- bioconductor-densvis
- bioconductor-depecher
- bioconductor-deqms
- bioconductor-descan2
- bioconductor-deseq2
- bioconductor-deseq
- bioconductor-destiny
- bioconductor-dexus
- bioconductor-dialignr
- bioconductor-diffbind
- bioconductor-differentialregulation
- bioconductor-diffhic
- bioconductor-diffustats
- bioconductor-dirichletmultinomial
- bioconductor-discordant
- bioconductor-distinct
- bioconductor-dmrcaller
- bioconductor-dnabarcodecompatibility
- bioconductor-dnabarcodes
- bioconductor-dnacopy
- bioconductor-dnashaper
- bioconductor-do.db
- bioconductor-doqtl
- bioconductor-dpeak
- bioconductor-dreamlet
- bioconductor-dropletutils
- bioconductor-dsimer
- bioconductor-dss
- bioconductor-ebarrays
- bioconductor-ebcoexpress
- bioconductor-ebimage
- bioconductor-ebseq
- bioconductor-edda
- bioconductor-edger
- bioconductor-edge
- bioconductor-eds
- bioconductor-eir
- bioconductor-enhancerhomologsearch
- bioconductor-enrichedheatmap
- bioconductor-enrichmentbrowser
- bioconductor-ensdb.hsapiens.v75
- bioconductor-epialleler
- bioconductor-epigrahmm
- bioconductor-epimutacions
- bioconductor-epiregulon
- bioconductor-epistasisga
- bioconductor-esatac
- bioconductor-eventpointer
- bioconductor-exomecopy
- bioconductor-expressionnormalizationworkflow
- bioconductor-expressionview
- bioconductor-extrachips
- bioconductor-fabia
- bioconductor-fastqcleaner
- bioconductor-fastseg
- bioconductor-fdb.infiniummethylation.hg19
- bioconductor-fdrame
- bioconductor-feast
- bioconductor-fgsea
- bioconductor-findmyfriends
- bioconductor-fishpond
- bioconductor-fithic
- bioconductor-flagme
- bioconductor-flames
- bioconductor-flipflop
- bioconductor-flowclust
- bioconductor-flowcore
- bioconductor-flowfp
- bioconductor-flowmatch
- bioconductor-flowpeaks
- bioconductor-flowq
- bioconductor-flowsom
- bioconductor-flowspy
- bioconductor-flowworkspace
- bioconductor-fmcsr
- bioconductor-fmrs
- bioconductor-fraser
- bioconductor-funchip
- bioconductor-fusesom
- bioconductor-g4snvhunter
- bioconductor-gaga
- bioconductor-garfield
- bioconductor-gbscleanr
- bioconductor-gcrma
- bioconductor-gcsconnection
- bioconductor-gdrcore
- bioconductor-gdsfmt
- bioconductor-geecc
- bioconductor-genefilter
- bioconductor-genegeneinter
- bioconductor-genenetworkbuilder
- bioconductor-generxcluster
- bioconductor-geneselectmmd
- bioconductor-geneselector
- bioconductor-genesis
- bioconductor-geneticsped
- bioconductor-genextender
- bioconductor-genie3
- bioconductor-genocn
- bioconductor-genogam
- bioconductor-genomation
- bioconductor-genomicalignments
- bioconductor-genomicranges
- bioconductor-genomictuples
- bioconductor-genoset
- bioconductor-genphen
- bioconductor-geodiff
- bioconductor-ggpa
- bioconductor-ggsc
- bioconductor-girafe
- bioconductor-glad
- bioconductor-glmgampoi
- bioconductor-globalancova
- bioconductor-gmapr
- bioconductor-gnet2
- bioconductor-gofuncr
- bioconductor-googlegenomics
- bioconductor-gopro
- bioconductor-gosemsim
- bioconductor-gosim
- bioconductor-gosummaries
- bioconductor-gpart
- bioconductor-gpa
- bioconductor-gpumagic
- bioconductor-grafgen
- bioconductor-graper
- bioconductor-graphalignment
- bioconductor-graph
- bioconductor-grenits
- bioconductor-grohmm
- bioconductor-gsean
- bioconductor-gsreg
- bioconductor-gsva
- bioconductor-h5mread
- bioconductor-h5vc
- bioconductor-hapfabia
- bioconductor-harman
- bioconductor-harshlight
- bioconductor-hdf5array
- bioconductor-hdtd
- bioconductor-hem
- bioconductor-hgc
- bioconductor-hgu133a.db
- bioconductor-hgu133a2.db
- bioconductor-hgu133plus2.db
- bioconductor-hgu95av2.db
- bioconductor-hibag
- bioconductor-hicdcplus
- bioconductor-hicdoc
- bioconductor-hicparser
- bioconductor-hicpotts
- bioconductor-hilbertcurve
- bioconductor-hilbertvis
- bioconductor-hilda
- bioconductor-hireewas
- bioconductor-hmmcopy
- bioconductor-hom.hs.inp.db
- bioconductor-homo.sapiens
- bioconductor-hoodscanr
- bioconductor-hopach
- bioconductor-hummingbird
- bioconductor-ibbig
- bioconductor-ibmq
- bioconductor-icare
- bioconductor-ichip
- bioconductor-iclusterplus
- bioconductor-iggeneusage
- bioconductor-ihwpaper
- bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
- bioconductor-illuminahumanmethylation450kmanifest
- bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19
- bioconductor-illuminahumanmethylationepicanno.ilm10b3.hg19
- bioconductor-illuminahumanmethylationepicanno.ilm10b4.hg19
- bioconductor-illuminahumanmethylationepicmanifest
- bioconductor-illuminaio
- bioconductor-illuminamousev2.db
- bioconductor-immapex
- bioconductor-immunoclust
- bioconductor-impute
- bioconductor-interactionset
- bioconductor-inversion
- bioconductor-ipath
- bioconductor-ippd
- bioconductor-iranges
- bioconductor-irisfgm
- bioconductor-iscream
- bioconductor-iseq
- bioconductor-isobayes
- bioconductor-isoformswitchanalyzer
- bioconductor-isogenegui
- bioconductor-isolde
- bioconductor-jmosaics
- bioconductor-junctionseq
- bioconductor-kebabs
- bioconductor-kegg.db
- bioconductor-knowyourcg
- bioconductor-lea
- bioconductor-lemur
- bioconductor-levi
- bioconductor-lfa
- bioconductor-limma
- bioconductor-linc
- bioconductor-linnorm
- bioconductor-logitt
- bioconductor-lpsymphony
- bioconductor-lumihumanall.db
- bioconductor-lvsmirna
- bioconductor-m3d
- bioconductor-maanova
- bioconductor-macpet
- bioconductor-maftools
- bioconductor-maigespack
- bioconductor-mait
- bioconductor-makecdfenv
- bioconductor-manor
- bioconductor-mapkl
- bioconductor-marr
- bioconductor-martini
- bioconductor-massspecwavelet
- bioconductor-matrixrider
- bioconductor-matter
- bioconductor-mbkmeans
- bioconductor-medme
- bioconductor-meshsim
- bioconductor-messina
- bioconductor-metaarray
- bioconductor-metabcombiner
- bioconductor-metabodynamics
- bioconductor-metahdep
- bioconductor-metaneighbor
- bioconductor-metapod
- bioconductor-metaseqr2
- bioconductor-metaseq
- bioconductor-methimpute
- bioconductor-methylclock
- bioconductor-methylkit
- bioconductor-methylmnm
- bioconductor-methylpipe
- bioconductor-mfa
- bioconductor-mgsa
- bioconductor-mgug4122a.db
- bioconductor-mia
- bioconductor-microrna
- bioconductor-milor
- bioconductor-mimosa
- bioconductor-mina
- bioconductor-minet
- bioconductor-mirnatap.db
- bioconductor-mirsm
- bioconductor-mirsponger
- bioconductor-mirsponge
- bioconductor-mitoclone2
- bioconductor-mitoode
- bioconductor-mlm4omics
- bioconductor-mmnet
- bioconductor-mnem
- bioconductor-mofa2
- bioconductor-monocle
- bioconductor-mosaics
- bioconductor-mosbi
- bioconductor-mosim
- bioconductor-motifcounter
- bioconductor-motifmatchr
- bioconductor-motiv
- bioconductor-mqtl.nmr
- bioconductor-msa2dist
- bioconductor-msa
- bioconductor-mscoreutils
- bioconductor-msnbase
- bioconductor-msnid
- bioconductor-mspurity
- bioconductor-msstatsconvert
- bioconductor-msstatslip
- bioconductor-msstatslobd
- bioconductor-msstatsptm
- bioconductor-msstatstmtptm
- bioconductor-msstats
- bioconductor-mulcom
- bioconductor-multiscan
- bioconductor-multtest
- bioconductor-muscle
- bioconductor-mutscan
- bioconductor-mvgst
- bioconductor-mzr
- bioconductor-nanomethviz
- bioconductor-nanostringdiff
- bioconductor-narrowpeaks
- bioconductor-ncdfflow
- bioconductor-ncgtw
- bioconductor-nem
- bioconductor-netbenchmark
- bioconductor-netboost
- bioconductor-nethet
- bioconductor-netpathminer
- bioconductor-netreg
- bioconductor-netresponse
- bioconductor-networkbma
- bioconductor-normr
- bioconductor-nudge
- bioconductor-nupop
- bioconductor-nxtirfcore
- bioconductor-oligo
- bioconductor-omada
- bioconductor-ompbam
- bioconductor-oncosimulr
- bioconductor-onlinefdr
- bioconductor-opencyto
- bioconductor-opossom
- bioconductor-oppar
- bioconductor-orfhunter
- bioconductor-orfik
- bioconductor-outrider
- bioconductor-oveseg
- bioconductor-paa
- bioconductor-pannbuilder
- bioconductor-panther.db
- bioconductor-pbase
- bioconductor-pbcmc
- bioconductor-pcamethods
- bioconductor-pcatools
- bioconductor-pdinfobuilder
- bioconductor-pharmacogx
- bioconductor-phenodist
- bioconductor-phenopath
- bioconductor-pics
- bioconductor-ping
- bioconductor-plier
- bioconductor-plotgardener
- bioconductor-plw
- bioconductor-podkat
- bioconductor-ppcseq
- bioconductor-pqsfinder
- bioconductor-prada
- bioconductor-predictionet
- bioconductor-preprocesscore
- bioconductor-profia
- bioconductor-profilescoredist
- bioconductor-proloc
- bioconductor-psichomics
- bioconductor-ptairms
- bioconductor-puma
- bioconductor-pwalign
- bioconductor-qckitfastq
- bioconductor-qpgraph
- bioconductor-qrqc
- bioconductor-qsea
- bioconductor-quasr
- bioconductor-quaternaryprod
- bioconductor-qubic
- bioconductor-r3cpet
- bioconductor-r453plus1toolbox
- bioconductor-raer
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- bioconductor-rbioinf
- bioconductor-rbowtie2
- bioconductor-rbowtie
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- bioconductor-rchemcpp
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- bioconductor-rfpred
- bioconductor-rgadem
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- bioconductor-rgoslin
- bioconductor-rgraphviz
- bioconductor-rhdf5client
- bioconductor-rhdf5filters
- bioconductor-rhdf5lib
- bioconductor-rhdf5
- bioconductor-rhisat2
- bioconductor-rhtslib
- bioconductor-ribodipa
- bioconductor-rigraphlib
- bioconductor-ringo
- bioconductor-risa
- bioconductor-rjmcmcnucleosomes
- bioconductor-rmassbank
- bioconductor-rmat
- bioconductor-rmir.hs.mirna
- bioconductor-rmmquant
- bioconductor-rnadecay
- bioconductor-rnaseqmap
- bioconductor-rnaseqsamplesize
- bioconductor-roc
- bioconductor-rots
- bioconductor-rprotobuflib
- bioconductor-rqc
- bioconductor-rqubic
- bioconductor-rsamtools
- bioconductor-rsbml
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- bioconductor-rsffreader
- bioconductor-rsubread
- bioconductor-rtandem
- bioconductor-rtracklayer
- bioconductor-rtreemix
- bioconductor-runibic
- bioconductor-s4arrays
- bioconductor-s4vectors
- bioconductor-sagx
- bioconductor-saigegds
- bioconductor-samspectral
- bioconductor-sanityr
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- bioconductor-sapfinder
- bioconductor-sc3
- bioconductor-scarray
- bioconductor-sccomp
- bioconductor-scddboost
- bioconductor-scde
- bioconductor-scfind
- bioconductor-scgps
- bioconductor-scider
- bioconductor-scmap
- bioconductor-scmet
- bioconductor-scmitomut
- bioconductor-scpipe
- bioconductor-scran
- bioconductor-scrapper
- bioconductor-screencounter
- bioconductor-screpertoire
- bioconductor-sctgif
- bioconductor-scuttle
- bioconductor-selectksigs
- bioconductor-seqarray
- bioconductor-seqbias
- bioconductor-seqcna
- bioconductor-seqtools
- bioconductor-shortread
- bioconductor-sictools
- bioconductor-signaturesearch
- bioconductor-signer
- bioconductor-sigpathway
- bioconductor-simat
- bioconductor-simd
- bioconductor-simlr
- bioconductor-simona
- bioconductor-simpleaffy
- bioconductor-simulatorz
- bioconductor-sim
- bioconductor-sincell
- bioconductor-singler
- bioconductor-sitepath
- bioconductor-slalom
- bioconductor-smad
- bioconductor-smap
- bioconductor-smoppix
- bioconductor-snapcgh
- bioconductor-snplocs.hsapiens.dbsnp144.grch38
- bioconductor-snprelate
- bioconductor-snpstats
- bioconductor-sojourner
- bioconductor-spari
- bioconductor-sparsearray
- bioconductor-sparsematrixstats
- bioconductor-splicer
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- bioconductor-spotlight
- bioconductor-sracipe
- bioconductor-srnadiff
- bioconductor-sspa
- bioconductor-stadyum
- bioconductor-stan
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- bioconductor-streamer
- bioconductor-structstrings
- bioconductor-suitor
- bioconductor-survclust
- bioconductor-survcomp
- bioconductor-sva
- bioconductor-svp
- bioconductor-switchbox
- bioconductor-synextend
- bioconductor-syntenet
- bioconductor-targetscan.hs.eg.db
- bioconductor-targetsearch
- bioconductor-tekrabber
- bioconductor-ternarynet
- bioconductor-tfbstools
- bioconductor-tidytof
- bioconductor-tigre
- bioconductor-tilingarray
- bioconductor-tissueenrich
- bioconductor-titancna
- bioconductor-tofsims
- bioconductor-topaseq
- bioconductor-transformgampoi
- bioconductor-transite
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- phonenumbers
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- prinseq-plus-plus
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- ptrimmer
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