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- perl-xml-parser-lite
- perl-xml-regexp
- perl-xml-sax-base
- perl-xml-sax-expat
- perl-xml-sax-writer
- perl-xml-sax
- perl-xml-semanticdiff
- perl-xml-simple
- perl-xml-twig
- perl-xml-writer
- perl-xml-xpathengine
- perl-xml-xpath
- perl-yaml-tiny
- perl-yaml
- pfam_scan
- pfp
- pgenlib
- pggb
- pgrc
- phables
- phame
- phantompeakqualtools
- phasius
- phcue-ck
- phipack
- phispy
- phist
- phizz
- phylics
- phylip
- phyloacc
- phylodm
- phyloflash
- phylopandas
- phyluce
- phyml
- phynder
- physher
- picard
- picopore
- picrust
- piler-cr
- pilon
- pin_hic
- pindel
- pipelign
- pipits
- pipmir
- piret
- pisad
- piscem
- pisces
- pispino
- pkiss
- planemo
- plant_tribes_gene_family_aligner
- plant_tribes_gene_family_classifier
- plant_tribes_gene_family_integrator
- plant_tribes_gene_family_phylogeny_builder
- plant_tribes_kaks_analysis
- plascope
- plasmidtron
- plass
- platypus-conquistador
- plek
- plink
- pneumocat
- poa
- polypolish
- popdel
- popins2
- poplddecay
- poppunk
- popscle
- porechop_abi
- porechop
- poretools
- portcullis
- poseidon-trident
- postmaster
- ppanggolin
- ppanini
- pplacer
- pp
- prank
- predictosaurus
- preseq
- presto
- primer3-py
- primer3
- prinseq-plus-plus
- prinseq
- privateer
- probamconvert
- probconsrna
- probcons
- proda
- prodigal-gv
- prodigal
- prokka
- promod3
- pronto
- prophyle
- prosampler
- prot-scriber
- proteinortho
- protrac
- psdm
- pseqsid
- psipred
- psirc
- psmc
- pullseq
- purge_dups
- purge_haplotigs
- pvacseq
- py-graphviz
- py2bit
- py_fasta_validator
- pyabpoa
- pyani
- pybamparser
- pybamtools
- pybbi
- pybdei
- pybedlite
- pybedtools
- pybel
- pybigtools
- pybigwig
- pybwa
- pycli
- pycoqc
- pycoverm
- pycsg
- pydemult
- pydna
- pydustmasker
- pyega3
- pyensembl
- pyfaidx
- pyfamsa
- pyfastani
- pyfastaq
- pyfasta
- pyfastx
- pygenometracks
- pygtftk
- pyhmmer
- pyimagingmspec
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