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#biotools_dev.xsd#
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#biotools_dev.xsd#
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<?xml version="1.0" encoding="UTF-8"?>
<!-- edited with XMLSpy v2012 rel. 2 sp1 (x64) (http://www.altova.com) by Jon Ison (private) -->
<xs:schema xmlns="http://bio.tools" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:altova="http://www.altova.com/xml-schema-extensions" targetNamespace="http://bio.tools" elementFormDefault="qualified" attributeFormDefault="unqualified">
<xs:element name="tools">
<xs:annotation>
<xs:documentation>Description of one or more bioinformatics tools - application software with well-defined data processing functions (inputs, outputs and operations). This includes simple tools with one or a few closely related functions, and complex, multimodal tools with many functions. Tools may be available available for immediate use as online services, or in a form which which you can download, install, configure and run yourself.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element ref="tool" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Description of a bioinformatics software tool - a software application with well-defined data processing functions (inputs, outputs and operations). A tool is a discrete, but possibly complex software entity.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:complexType name="linkType">
<xs:annotation>
<xs:documentation>HTML link.</xs:documentation>
</xs:annotation>
<xs:all>
<xs:element name="url" type="urlftpType">
<xs:annotation>
<xs:documentation>A link of some relevance to the software (URL).</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="type" type="enumType">
<xs:annotation>
<xs:documentation>The type of data or information that is obtained when the link is resolved.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="comment" minOccurs="0">
<xs:annotation>
<xs:documentation>Comment about the link.</xs:documentation>
<xs:appinfo>
<uiTip>Comment about the link.</uiTip>
</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:all>
</xs:complexType>
<xs:element name="tool">
<xs:annotation>
<xs:documentation>Attributes of a bioinformatics tool.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="summary">
<xs:annotation>
<xs:documentation>Basic information about the software.</xs:documentation>
<xs:appinfo>
<uiTip>Basic information about the software.</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="name">
<xs:annotation>
<xs:documentation>Canonical software name assigned by the software developer or service provider.</xs:documentation>
<xs:appinfo>
<uiTip>Canonical software name</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="toolName"/>
</altova:exampleValues>
</xs:appinfo>
<xs:documentation>The name has a 100 character limit and may only contain uppercase and lowercase letters, decimal digits, period, comma, dash, colon, plus symbol, semicolon and parentheses.</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="nameType">
<xs:pattern value="[\p{Zs}A-Za-z0-9+\.,\-_:;()]*"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="toolID">
<xs:annotation>
<xs:documentation>Unique ID of the tool that is assigned upon registration of the software in bio.tools, normally identical to tool name.</xs:documentation>
<xs:documentation>The ID is a URL-safe derivative of (often identical to) the tool name restricted to 12 characters maximum. Unreserved characters (uppercase and lowercase letters, decimal digits, hyphen, period, underscore, and tilde) are allowed. All other characters including reserved characters and other characters deemed unsafe are not allowed. Spaces can be preserved as underscore ("_").</xs:documentation>
<xs:appinfo>
<uiTip>Unique ID of the tool that is assigned upon registration of the software in bio.tools.</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="toolName"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="biotoolsIdType">
<xs:maxLength value="12"/>
<xs:minLength value="1"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:sequence minOccurs="0">
<xs:element name="version">
<xs:annotation>
<xs:documentation>Version (typically a version number) of the software assigned by the software developer or service provider.</xs:documentation>
<xs:appinfo>
<uiTip>Software version number.</uiTip>
<biotoolsUsage>Mandatory (conditionally)</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="versionNumber"/>
</altova:exampleValues>
</xs:appinfo>
<xs:documentation>The name has a 100 character limit and may only contain uppercase and lowercase letters, decimal digits, period, comma, dash, colon, plus symbol, semicolon and parentheses.</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="nameType">
<xs:whiteSpace value="collapse"/>
<xs:pattern value="[\p{Zs}A-Za-z0-9+\.,\-_:;()]*"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="versionID">
<xs:annotation>
<xs:documentation>Unique ID of a tool version that is assigned upon registration of the software in bio.tools.</xs:documentation>
<xs:documentation>The ID is a URL-safe derivative of (often identical to) the version restricted to 12 characters maximum. Unreserved characters (uppercase and lowercase letters, decimal digits, hyphen, period, underscore, and tilde) are allowed. All other characters including reserved characters and other characters deemed unsafe are not allowed. Spaces can be preserved as underscore ("_").</xs:documentation>
<xs:appinfo>
<uiTip>Unique ID of a tool version that is assigned upon registration of the software in bio.tools.</uiTip>
<biotoolsUsage>Mandatory (conditionally)</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="1_0_0"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="biotoolsIdType">
<xs:maxLength value="12"/>
<xs:minLength value="1"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
</xs:sequence>
<xs:element name="doi" type="doiType" minOccurs="0">
<xs:annotation>
<xs:documentation>Canonical Digital Object Identifier of the software assigned by the software developer or service provider.</xs:documentation>
<xs:appinfo>
<uiTip>Canonical Digital Object Identifier of the software.</uiTip>
<biotoolsUsage>Optional</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="doi:10.1093/nar/gkv1116"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
</xs:element>
<xs:element name="shortDescription" minOccurs="0">
<xs:annotation>
<xs:documentation>Short and concise textual description of the software function.</xs:documentation>
<xs:documentation>A single declarative sentence in the present tense, providing a terse statement of the tool function. State what is done, i.e.operation, and primary inputs and outputs, but not how. Do not include tool name. Minimum 10 and maximum 200 characters. See http://biotools.readthedocs.io/.</xs:documentation>
<xs:appinfo>
<uiTip>Short software description : a single declarative sentence in the present tense stating the tool function. Do not include tool name.</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="Short software description : a single declarative sentence in the present tense stating the tool function. Do not include tool name."/>
<altova:example value="Detect and visualise single-nucleotide polymorphisms (SNPs)."/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:string">
<xs:maxLength value="200"/>
<xs:whiteSpace value="collapse"/>
<xs:minLength value="10"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="description">
<xs:annotation>
<xs:documentation>Textual description of the software.</xs:documentation>
<xs:documentation>This can be a few sentences copy-pasted from the software homepage.</xs:documentation>
<xs:appinfo>
<uiTip>Software description, e.g. a few sentences adapted from the software publication abstract or homepage. Maximum 1000 characters.</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="Software description, e.g. a few sentences adapted from the software publication abstract or homepage."/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="textType"/>
</xs:simpleType>
</xs:element>
<xs:element name="homepage" type="urlType">
<xs:annotation>
<xs:documentation>Homepage of the software, or some URL that best serves this purpose.</xs:documentation>
<xs:appinfo>
<uiTip>Homepage of the software, or some URL that best serves this purpose.</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="function" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Details of a function the software provides, expressed in terms from the EDAM ontology.</xs:documentation>
<xs:appinfo>
<uiTip>Details of a function the software provides, expressed in terms from the EDAM ontology.</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="operation" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>The basic operation(s) performed by this software function (EDAM Operation).</xs:documentation>
<xs:documentation>An EDAM Operation concept URL and / or term are specified, e.g. "Multiple sequence alignment", http://edamontology.org/operation_0492.</xs:documentation>
<xs:appinfo>
<uiTip>Operation performed (EDAM operation).</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:complexContent>
<xs:restriction base="ontologyConcept">
<xs:choice>
<xs:sequence>
<xs:element name="uri">
<xs:annotation>
<xs:documentation>URL of an EDAM Operation concept.</xs:documentation>
<xs:appinfo>
<uiTip>EDAM Operation URL.</uiTip>
<biotoolsUsage>Mandatory (conditionally)</biotoolsUsage>
</xs:appinfo>
<xs:documentation>The URL must be in the EDAM Operation namespace, i.e. http://edamontology.org/operation_.</xs:documentation>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="http://edamontology.org/operation_0492"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:anyURI">
<xs:pattern value="http://edamontology.org/operation_[0-9]{4}"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="term" type="xs:token" minOccurs="0">
<xs:annotation>
<xs:documentation>An EDAM Operation term (preferred label or synonym).</xs:documentation>
<xs:appinfo>
<uiTip>EDAM Operation term (preferred label or synonym).</uiTip>
<biotoolsUsage>Mandatory (conditionally)</biotoolsUsage>
</xs:appinfo>
<xs:documentation>The term must be either the preferred label of the concept or a synonym of this term, as defined in EDAM.</xs:documentation>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="Multiple sequence alignment"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:sequence>
<xs:element name="term" type="xs:token"/>
</xs:choice>
</xs:restriction>
</xs:complexContent>
</xs:complexType>
</xs:element>
<xs:element name="input" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Details of primary input data.</xs:documentation>
<xs:appinfo>
<uiTip>Details of primary input data.</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:complexContent>
<xs:restriction base="dataType">
<xs:sequence>
<xs:element name="data" type="EDAMdata">
<xs:annotation>
<xs:documentation>Type of primary input data, if any (EDAM data). </xs:documentation>
<xs:appinfo>
<uiTip>Input data type (EDAM data).</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
<xs:documentation>An EDAM Data concept URL and / or term are specified, e.g. "Protein sequences", http://edamontology.org/data_2976. </xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="format" type="EDAMformat" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Allowed format(s) of the input data (EDAM Format). </xs:documentation>
<xs:appinfo>
<uiTip>Input data format (EDAM format).</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>An EDAM Format concept URL and / or term are specified, e.g. "FASTA", http://edamontology.org/format_1929.</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:restriction>
</xs:complexContent>
</xs:complexType>
</xs:element>
<xs:element name="output" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Details of primary output data.</xs:documentation>
<xs:appinfo>
<uiTip>Details of primary output data.</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:complexContent>
<xs:restriction base="dataType">
<xs:sequence>
<xs:element name="data" type="EDAMdata">
<xs:annotation>
<xs:documentation>Type of primary output data, if any (EDAM Data).</xs:documentation>
<xs:appinfo>
<uiTip>Output data type (EDAM data).</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
<xs:documentation>An EDAM Data concept URL and (optionally) term are specified, e.g. "Sequence alignment", http://edamontology.org/data_0863.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="format" type="EDAMformat" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Allowed format(s) of the output data (EDAM Format).</xs:documentation>
<xs:appinfo>
<uiTip>Output data format (EDAM format).</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>An EDAM Format concept URL and (optionally) term are specified, e.g. “FASTA-aln”, http://edamontology.org/format_1984.</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:restriction>
</xs:complexContent>
</xs:complexType>
</xs:element>
<xs:element name="comment" minOccurs="0">
<xs:annotation>
<xs:documentation>Concise comment about this function, if not apparent from the software description and EDAM annotations.</xs:documentation>
<xs:appinfo>
<uiTip>General comment about function.</uiTip>
<biotoolsUsage>Optional</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="Concise comment about this function, if not apparent from the software description and EDAM annotations."/>
</altova:exampleValues>
</xs:appinfo>
<xs:documentation>Maximum 500 characters.</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="textType">
<xs:maxLength value="500"/>
<xs:whiteSpace value="collapse"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="labels">
<xs:annotation>
<xs:documentation>Miscellaneous scientific, technical and administrative details of the software, expressed in terms from controlled vocabularies.</xs:documentation>
<xs:appinfo>
<uiTip>Miscellaneous scientific, technical and administrative details of the software, expressed in terms from controlled vocabularies.</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="toolType" minOccurs="1" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>A type of application software: a discrete software entity can have more than one type.</xs:documentation>
<xs:documentation>bio.tools includes all types of bioinformatics tools: application software with well-defined data processing functions (inputs, outputs and operations). When registering a tool, one or more tool types may be assigned, reflecting the different facets of the software being described.</xs:documentation>
<xs:appinfo>
<uiTip>Type of tool. A tool may have more than one type reflecting its different facets.</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
<enum>
<enumItem>
<term>Command-line tool</term>
<uiTip>A tool with a text-based (command-line) interface.</uiTip>
</enumItem>
<enumItem>
<term>Database portal</term>
<uiTip>A Web application, suite or workbench providing a portal to a biological database.</uiTip>
</enumItem>
<enumItem>
<term>Desktop application</term>
<uiTip>A tool with a graphical user interface that runs on your desktop environment, e.g. on a PC or mobile device.</uiTip>
</enumItem>
<enumItem>
<term>Library</term>
<uiTip>A collection of components that are used to construct other tools. bio.tools scope includes component libraries performing high-level bioinformatics functions but excludes lower-level programming libraries.</uiTip>
</enumItem>
<enumItem>
<term>Ontology</term>
<uiTip>A collection of information about concepts, including terms, synonyms, descriptions etc.</uiTip>
</enumItem>
<enumItem>
<term>Plug-in</term>
<uiTip>A software component encapsulating a set of related functions, which are not standalone but depend upon (and typically extend the function of) other software for its use, e.g. a Javascript widget, plug-in, extension or add-on.</uiTip>
</enumItem>
<enumItem>
<term>Script</term>
<uiTip>A tool written for some run-time environment (e.g. other applications or an OS shell) that automates the execution of tasks. Often a small program written in a general-purpose languages (e.g. Perl, Python) or some domain-specific languages (e.g. sed).</uiTip>
</enumItem>
<enumItem>
<term>SPARQL endpoint</term>
<uiTip>A service that provides queries over an RDF knowledge base via the SPARQL query language and protocol, and returns results via HTTP.</uiTip>
</enumItem>
<enumItem>
<term>Suite</term>
<uiTip>A collection of tools which are bundled together into a convenient toolkit. Such tools typically share related functionality, a common user interface and can exchange data conveniently. This includes collections of stand-alone command-line tools, or Web applications within a common portal.</uiTip>
</enumItem>
<enumItem>
<term>Web application</term>
<uiTip>A tool with a graphical user interface that runs in your Web browser.</uiTip>
</enumItem>
<enumItem>
<term>Web API</term>
<uiTip>An application programming interface (API) consisting of endpoints to a request-response message system accessible via HTTP. Includes everything from simple data-access URLs to RESTful APIs.</uiTip>
</enumItem>
<enumItem>
<term>Web service</term>
<uiTip>An API described in a machine readable form (typically WSDL) providing programmatic access via SOAP over HTTP.</uiTip>
</enumItem>
<enumItem>
<term>Workbench</term>
<uiTip>An application or suite with a graphical user interface, providing an integrated environment for data analysis which includes or may be extended with any number of functions or tools. Includes workflow systems, platforms, frameworks etc.</uiTip>
</enumItem>
<enumItem>
<term>Workflow</term>
<uiTip>A set of tools which have been composed together into a pipeline of some sort. Such tools are (typically) standalone, but are composed for convenience, for instance for batch execution via some workflow engine or script.</uiTip>
</enumItem>
</enum>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Command-line tool"/>
<xs:enumeration value="Database portal"/>
<xs:enumeration value="Desktop application"/>
<xs:enumeration value="Library"/>
<xs:enumeration value="Ontology"/>
<xs:enumeration value="Plug-in"/>
<xs:enumeration value="Script"/>
<xs:enumeration value="SPARQL endpoint"/>
<xs:enumeration value="Suite"/>
<xs:enumeration value="Web application"/>
<xs:enumeration value="Web API"/>
<xs:enumeration value="Web service"/>
<xs:enumeration value="Workbench"/>
<xs:enumeration value="Workflow"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="topic" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>General scientific domain the software serves or other general category (EDAM Topic).</xs:documentation>
<xs:documentation>An EDAM Topic concept URL and / or term are specified, e.g. "Proteomics", http://edamontology.org/topic_0121.</xs:documentation>
<xs:appinfo>
<uiTip>Scientific topic (EDAM Topic).</uiTip>
<biotoolsUsage>Mandatory</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:complexContent>
<xs:restriction base="ontologyConcept">
<xs:choice>
<xs:sequence>
<xs:element name="uri">
<xs:annotation>
<xs:documentation>URL of an EDAM Topic concept.</xs:documentation>
<xs:appinfo>
<uiTip>EDAM Topic URL.</uiTip>
<biotoolsUsage>Mandatory (conditionally)</biotoolsUsage>
</xs:appinfo>
<xs:documentation>The URL must be in the EDAM Topic namespace, i.e. http://edamontology.org/topic_.</xs:documentation>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="http://edamontology.org/topic_0121"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:anyURI">
<xs:pattern value="http://edamontology.org/topic_[0-9]{4}"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="term" type="xs:token" minOccurs="0">
<xs:annotation>
<xs:documentation>An EDAM Topic term (preferred label or synonym).</xs:documentation>
<xs:documentation>The term must be either the preferred label of the concept or a synonym of this term, as defined in EDAM.</xs:documentation>
<xs:appinfo>
<uiTip>EDAM Topic term (preferred label or synonym).</uiTip>
<biotoolsUsage>Mandatory (conditionally)</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="Proteomics"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:sequence>
<xs:element name="term" type="xs:token"/>
</xs:choice>
</xs:restriction>
</xs:complexContent>
</xs:complexType>
</xs:element>
<xs:element name="goTermID" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Gene function including molecular function, cellular component and biological process. The ID of Gene Ontology (GO) concept(s) are specified.</xs:documentation>
<xs:documentation>A GO concept ID is specified, e.g. “GO:0005125”. Gene Ontology (GO) covers biological concepts and provides terms to describe gene function, including molecular function (molecular activities of gene products), cellular component (where gene products are active) and biological process (pathways and larger processes made up of the activities of multiple gene products).</xs:documentation>
<xs:appinfo>
<uiTip>Gene Ontology (GO) term ID.</uiTip>
<biotoolsUsage>Optional</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="GO:0005125"/>
<altova:example value="0005125"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:token">
<xs:pattern value="[0-9]{7}|GO:[0-9]{7}"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="soTermID" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Features which can be located on a biological sequence. The ID of Sequence Ontology (SO) concept(s) are specified.</xs:documentation>
<xs:documentation>A SO concept ID is specified, e.g. “SO:0000147”. Sequence Ontology (SO) provides terms to describe features which can be located on a biological sequence. SO includes biological features (e.g. binding site and exon) are those which are defined by their disposition to be involved in a biological process; biomaterial features (e.g. aptamer and PCR product) intended for use in an experiment and experimental features (the result of an experiment). The biological features are most relevant to software annotation.</xs:documentation>
<xs:appinfo>
<uiTip>Sequence Ontology (SO) term ID.</uiTip>
<biotoolsUsage>Optional</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="SO:0000307"/>
<altova:example value="0000307"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:token">
<xs:pattern value="[0-9]{7}|SO:[0-9]{7}"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="taxID" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>NCBI taxonomy ID of taxonomic group the software (particularly database portals) caters for.</xs:documentation>
<xs:documentation>The Taxonomy ID (TaxID or taxon number), e.g. “9606” is a stable unique identifier for each taxonomic group in the NCBI Taxonomy Browser. The TaxID is seen in the GenBank records under feature source.</xs:documentation>
<xs:appinfo>
<uiTip>NCBI taxonomic group ID.</uiTip>
<biotoolsUsage>Optional</biotoolsUsage>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="9606"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:token">
<xs:pattern value="[1-9][0-9]{0,8}"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="operatingSystem" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>The operating system supported by a downloadable software package.</xs:documentation>
<xs:appinfo>
<uiTip>Operating system supported by a downloadable software package.</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Linux"/>
<xs:enumeration value="Windows"/>
<xs:enumeration value="Mac"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="language" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Name of programming language the software source code was written in.</xs:documentation>
<xs:appinfo>
<uiTip>Source code language.</uiTip>
<biotoolsUsage>Optional</biotoolsUsage>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="ActionScript"/>
<xs:enumeration value="Ada"/>
<xs:enumeration value="AppleScript"/>
<xs:enumeration value="Assembly language"/>
<xs:enumeration value="AWK"/>
<xs:enumeration value="Bash"/>
<xs:enumeration value="C"/>
<xs:enumeration value="C#"/>
<xs:enumeration value="C++"/>
<xs:enumeration value="COBOL"/>
<xs:enumeration value="ColdFusion"/>
<xs:enumeration value="CWL"/>
<xs:enumeration value="D"/>
<xs:enumeration value="Delphi"/>
<xs:enumeration value="Dylan"/>
<xs:enumeration value="Eiffel"/>
<xs:enumeration value="Forth"/>
<xs:enumeration value="Fortran"/>
<xs:enumeration value="Groovy"/>
<xs:enumeration value="Haskell"/>
<xs:enumeration value="Icarus"/>
<xs:enumeration value="Java"/>
<xs:enumeration value="Javascript"/>
<xs:enumeration value="JSP"/>
<xs:enumeration value="LabVIEW"/>
<xs:enumeration value="Lisp"/>
<xs:enumeration value="Lua"/>
<xs:enumeration value="Maple"/>
<xs:enumeration value="Mathematica"/>
<xs:enumeration value="MATLAB"/>
<xs:enumeration value="MLXTRAN"/>
<xs:enumeration value="NMTRAN"/>
<xs:enumeration value="Pascal"/>
<xs:enumeration value="Perl"/>
<xs:enumeration value="PHP"/>
<xs:enumeration value="Prolog"/>
<xs:enumeration value="PyMOL"/>
<xs:enumeration value="Python"/>
<xs:enumeration value="R"/>
<xs:enumeration value="Racket"/>
<xs:enumeration value="REXX"/>
<xs:enumeration value="Ruby"/>
<xs:enumeration value="SAS"/>
<xs:enumeration value="Scala"/>
<xs:enumeration value="Scheme"/>
<xs:enumeration value="Shell"/>
<xs:enumeration value="Smalltalk"/>
<xs:enumeration value="SQL"/>
<xs:enumeration value="Turing"/>
<xs:enumeration value="Verilog"/>
<xs:enumeration value="VHDL"/>
<xs:enumeration value="Visual Basic"/>
<xs:enumeration value="Other"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="license" minOccurs="0">
<xs:annotation>
<xs:documentation>Software or data usage license.</xs:documentation>
<xs:appinfo>
<uiTip>Software or data usage license.</uiTip>
<biotoolsUsage>Recommended</biotoolsUsage>
</xs:appinfo>
<xs:documentation>Identifier from the SPDX license list (https://spdx.org/licenses/). Based on the specified license a label (e.g. "Open-source") is attached to the tool.</xs:documentation>
<xs:appinfo>
<enum>
<enumItem>
<term>Open-source</term>
<uiTip>Software is made available under a license approved by the Open Source Initiative (OSI). The software is distributed in a way that satisfies the 10 criteria of the Open Source Definition maintained by OSI (see https://opensource.org/docs/osd). The source code is available to others.</uiTip>
</enumItem>
<enumItem>
<term>Free software</term>
<uiTip>Free as in “freedom” not necessarily free of charge. Software is made available under a license approved by the Free Software Foundation (FSF). The software satisfies the criteria of the Free Software Definition maintained by FSF (see http://www.gnu.org/philosophy/free-sw.html). The source code is available to others.</uiTip>
</enumItem>
<enumItem>
<term>Free and open source</term>
<uiTip>Software is made available under a license approved by both the Open Source Initiative (OSI) and the Free Software Foundation (FSF), and satisfies the criteria of the OSI Open Source Definition maintained (https://opensource.org/docs/osd) and the FSF Free Software Definition (http://www.gnu.org/philosophy/free-sw.html). Such software ensures users have the freedom to run, copy, distribute, study, change and improve the software. The source code is available to others.</uiTip>
</enumItem>
<enumItem>
<term>Copyleft</term>
<uiTip>Software is made available under a license designated as “copyleft” by the Free Software Foundation (FSF). The license ensures such software is free and that all modified and extended versions of the program are free as well. Free as in “freedom” not necessarily free of charge, as per the Free Software Definition maintained by FSF (see http://www.gnu.org/philosophy/free-sw.html).</uiTip>
</enumItem>
</enum>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="0BSD"/>
<xs:enumeration value="AAL"/>
<xs:enumeration value="ADSL"/>
<xs:enumeration value="AFL-1.1"/>
<xs:enumeration value="AFL-1.2"/>
<xs:enumeration value="AFL-2.0"/>
<xs:enumeration value="AFL-2.1"/>
<xs:enumeration value="AFL-3.0"/>
<xs:enumeration value="AGPL-1.0"/>
<xs:enumeration value="AGPL-3.0"/>
<xs:enumeration value="AMDPLPA"/>
<xs:enumeration value="AML"/>
<xs:enumeration value="AMPAS"/>
<xs:enumeration value="ANTLR-PD"/>
<xs:enumeration value="APAFML"/>
<xs:enumeration value="APL-1.0"/>
<xs:enumeration value="APSL-1.0"/>
<xs:enumeration value="APSL-1.1"/>
<xs:enumeration value="APSL-1.2"/>
<xs:enumeration value="APSL-2.0"/>
<xs:enumeration value="Abstyles"/>
<xs:enumeration value="Adobe-2006"/>
<xs:enumeration value="Adobe-Glyph"/>
<xs:enumeration value="Afmparse"/>
<xs:enumeration value="Aladdin"/>
<xs:enumeration value="Apache-1.0"/>
<xs:enumeration value="Apache-1.1"/>
<xs:enumeration value="Apache-2.0"/>
<xs:enumeration value="Artistic-1.0"/>
<xs:enumeration value="Artistic-1.0-Perl"/>
<xs:enumeration value="Artistic-1.0-cl8"/>
<xs:enumeration value="Artistic-2.0"/>
<xs:enumeration value="BSD-2-Clause"/>
<xs:enumeration value="BSD-2-Clause-FreeBSD"/>
<xs:enumeration value="BSD-2-Clause-NetBSD"/>
<xs:enumeration value="BSD-3-Clause"/>
<xs:enumeration value="BSD-3-Clause-Attribution"/>
<xs:enumeration value="BSD-3-Clause-Clear"/>
<xs:enumeration value="BSD-3-Clause-LBNL"/>
<xs:enumeration value="BSD-3-Clause-No-Nuclear-License"/>
<xs:enumeration value="BSD-3-Clause-No-Nuclear-License-2014"/>
<xs:enumeration value="BSD-3-Clause-No-Nuclear-Warranty"/>
<xs:enumeration value="BSD-4-Clause"/>
<xs:enumeration value="BSD-4-Clause-UC"/>
<xs:enumeration value="BSD-Protection"/>
<xs:enumeration value="BSD-Source-Code"/>
<xs:enumeration value="BSL-1.0"/>
<xs:enumeration value="Bahyph"/>
<xs:enumeration value="Barr"/>
<xs:enumeration value="Beerware"/>
<xs:enumeration value="BitTorrent-1.0"/>
<xs:enumeration value="BitTorrent-1.1"/>
<xs:enumeration value="Borceux"/>
<xs:enumeration value="CATOSL-1.1"/>
<xs:enumeration value="CBS License"/>
<xs:enumeration value="CC-BY-1.0"/>
<xs:enumeration value="CC-BY-2.0"/>
<xs:enumeration value="CC-BY-2.5"/>
<xs:enumeration value="CC-BY-3.0"/>
<xs:enumeration value="CC-BY-4.0"/>
<xs:enumeration value="CC-BY-NC-1.0"/>
<xs:enumeration value="CC-BY-NC-2.0"/>
<xs:enumeration value="CC-BY-NC-2.5"/>
<xs:enumeration value="CC-BY-NC-3.0"/>
<xs:enumeration value="CC-BY-NC-4.0"/>
<xs:enumeration value="CC-BY-NC-ND-1.0"/>
<xs:enumeration value="CC-BY-NC-ND-2.0"/>
<xs:enumeration value="CC-BY-NC-ND-2.5"/>
<xs:enumeration value="CC-BY-NC-ND-3.0"/>
<xs:enumeration value="CC-BY-NC-ND-4.0"/>
<xs:enumeration value="CC-BY-NC-SA-1.0"/>
<xs:enumeration value="CC-BY-NC-SA-2.0"/>
<xs:enumeration value="CC-BY-NC-SA-2.5"/>
<xs:enumeration value="CC-BY-NC-SA-3.0"/>
<xs:enumeration value="CC-BY-NC-SA-4.0"/>
<xs:enumeration value="CC-BY-ND-1.0"/>
<xs:enumeration value="CC-BY-ND-2.0"/>
<xs:enumeration value="CC-BY-ND-2.5"/>
<xs:enumeration value="CC-BY-ND-3.0"/>
<xs:enumeration value="CC-BY-ND-4.0"/>
<xs:enumeration value="CC-BY-SA-1.0"/>
<xs:enumeration value="CC-BY-SA-2.0"/>
<xs:enumeration value="CC-BY-SA-2.5"/>
<xs:enumeration value="CC-BY-SA-3.0"/>
<xs:enumeration value="CC-BY-SA-4.0"/>
<xs:enumeration value="CC0-1.0"/>
<xs:enumeration value="CDDL-1.0"/>
<xs:enumeration value="CDDL-1.1"/>
<xs:enumeration value="CECILL-1.0"/>
<xs:enumeration value="CECILL-1.1"/>
<xs:enumeration value="CECILL-2.0"/>
<xs:enumeration value="CECILL-2.1"/>
<xs:enumeration value="CECILL-B"/>
<xs:enumeration value="CECILL-C"/>
<xs:enumeration value="CNRI-Jython"/>
<xs:enumeration value="CNRI-Python"/>
<xs:enumeration value="CNRI-Python-GPL-Compatible"/>
<xs:enumeration value="CPAL-1.0"/>
<xs:enumeration value="CPL-1.0"/>
<xs:enumeration value="CPOL-1.02"/>
<xs:enumeration value="CUA-OPL-1.0"/>
<xs:enumeration value="Caldera"/>
<xs:enumeration value="ClArtistic"/>
<xs:enumeration value="Condor-1.1"/>
<xs:enumeration value="Crossword"/>
<xs:enumeration value="CrystalStacker"/>
<xs:enumeration value="Cube"/>
<xs:enumeration value="D-FSL-1.0"/>
<xs:enumeration value="DOC"/>
<xs:enumeration value="DSDP"/>
<xs:enumeration value="Dotseqn"/>
<xs:enumeration value="ECL-1.0"/>
<xs:enumeration value="ECL-2.0"/>
<xs:enumeration value="EFL-1.0"/>
<xs:enumeration value="EFL-2.0"/>
<xs:enumeration value="EPL-1.0"/>
<xs:enumeration value="EUDatagrid"/>
<xs:enumeration value="EUPL-1.0"/>
<xs:enumeration value="EUPL-1.1"/>
<xs:enumeration value="Entessa"/>
<xs:enumeration value="ErlPL-1.1"/>
<xs:enumeration value="Eurosym"/>
<xs:enumeration value="FSFAP"/>
<xs:enumeration value="FSFUL"/>
<xs:enumeration value="FSFULLR"/>
<xs:enumeration value="FTL"/>
<xs:enumeration value="Fair"/>
<xs:enumeration value="Frameworx-1.0"/>
<xs:enumeration value="FreeImage"/>
<xs:enumeration value="GFDL-1.1"/>
<xs:enumeration value="GFDL-1.2"/>
<xs:enumeration value="GFDL-1.3"/>
<xs:enumeration value="GL2PS"/>
<xs:enumeration value="GPL-1.0"/>
<xs:enumeration value="GPL-2.0"/>
<xs:enumeration value="GPL-3.0"/>
<xs:enumeration value="Giftware"/>
<xs:enumeration value="Glide"/>
<xs:enumeration value="Glulxe"/>
<xs:enumeration value="HPND"/>
<xs:enumeration value="HaskellReport"/>
<xs:enumeration value="IBM-pibs"/>
<xs:enumeration value="ICU"/>
<xs:enumeration value="IJG"/>
<xs:enumeration value="IPA"/>
<xs:enumeration value="IPL-1.0"/>
<xs:enumeration value="ISC"/>
<xs:enumeration value="ImageMagick"/>
<xs:enumeration value="Imlib2"/>
<xs:enumeration value="Info-ZIP"/>
<xs:enumeration value="Intel"/>
<xs:enumeration value="Intel-ACPI"/>
<xs:enumeration value="Interbase-1.0"/>
<xs:enumeration value="JSON"/>
<xs:enumeration value="JasPer-2.0"/>
<xs:enumeration value="LAL-1.2"/>
<xs:enumeration value="LAL-1.3"/>
<xs:enumeration value="LGPL-2.0"/>
<xs:enumeration value="LGPL-2.1"/>
<xs:enumeration value="LGPL-3.0"/>
<xs:enumeration value="LGPLLR"/>
<xs:enumeration value="LPL-1.0"/>
<xs:enumeration value="LPL-1.02"/>
<xs:enumeration value="LPPL-1.0"/>
<xs:enumeration value="LPPL-1.1"/>
<xs:enumeration value="LPPL-1.2"/>
<xs:enumeration value="LPPL-1.3a"/>
<xs:enumeration value="LPPL-1.3c"/>
<xs:enumeration value="Latex2e"/>
<xs:enumeration value="Leptonica"/>
<xs:enumeration value="LiLiQ-P-1.1"/>
<xs:enumeration value="LiLiQ-R-1.1"/>
<xs:enumeration value="LiLiQ-Rplus-1.1"/>
<xs:enumeration value="Libpng"/>
<xs:enumeration value="MIT"/>
<xs:enumeration value="MIT-CMU"/>
<xs:enumeration value="MIT-advertising"/>
<xs:enumeration value="MIT-enna"/>
<xs:enumeration value="MIT-feh"/>
<xs:enumeration value="MITNFA"/>
<xs:enumeration value="MPL-1.0"/>
<xs:enumeration value="MPL-1.1"/>
<xs:enumeration value="MPL-2.0"/>
<xs:enumeration value="MPL-2.0-no-copyleft-exception"/>
<xs:enumeration value="MS-PL"/>
<xs:enumeration value="MS-RL"/>
<xs:enumeration value="MTLL"/>
<xs:enumeration value="MakeIndex"/>
<xs:enumeration value="MirOS"/>
<xs:enumeration value="Motosoto"/>
<xs:enumeration value="Multics"/>
<xs:enumeration value="Mup"/>
<xs:enumeration value="NASA-1.3"/>
<xs:enumeration value="NBPL-1.0"/>
<xs:enumeration value="NCSA"/>
<xs:enumeration value="NGPL"/>
<xs:enumeration value="NLOD-1.0"/>
<xs:enumeration value="NLPL"/>
<xs:enumeration value="NOSL"/>
<xs:enumeration value="NPL-1.0"/>
<xs:enumeration value="NPL-1.1"/>
<xs:enumeration value="NPOSL-3.0"/>
<xs:enumeration value="NRL"/>
<xs:enumeration value="NTP"/>
<xs:enumeration value="Naumen"/>
<xs:enumeration value="NetCDF"/>
<xs:enumeration value="Newsletr"/>
<xs:enumeration value="Nokia"/>
<xs:enumeration value="Noweb"/>
<xs:enumeration value="Nunit"/>
<xs:enumeration value="OCCT-PL"/>
<xs:enumeration value="OCLC-2.0"/>
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