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Update bcftools container image to 1.20--h8b25389_0.
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3 files changed

+6
-6
lines changed

3 files changed

+6
-6
lines changed

core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -35,8 +35,8 @@ class BcftoolsCallArgs extends Args4jBase {
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@Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
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var executable: String = "bcftools"
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38-
@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.")
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var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0"
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@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.")
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var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0"
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@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
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var sudo: Boolean = false

core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -36,8 +36,8 @@ class BcftoolsMpileupArgs extends Args4jBase {
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@Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
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var executable: String = "bcftools"
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39-
@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.")
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var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0"
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@Args4jOption(required = false, name = "-docker_image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.")
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var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0"
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@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
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var sudo: Boolean = false

core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -39,8 +39,8 @@ class BcftoolsNormArgs extends Args4jBase {
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@Args4jOption(required = false, name = "-executable", usage = "Path to the bcftools executable. Defaults to bcftools.")
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var executable: String = "bcftools"
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42-
@Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.19--h8b25389_0.")
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var image: String = "quay.io/biocontainers/bcftools:1.19--h8b25389_0"
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@Args4jOption(required = false, name = "-image", usage = "Container image to use. Defaults to quay.io/biocontainers/bcftools:1.20--h8b25389_0.")
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var image: String = "quay.io/biocontainers/bcftools:1.20--h8b25389_0"
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@Args4jOption(required = false, name = "-sudo", usage = "Run via sudo.")
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var sudo: Boolean = false

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