Update standard.xml

Author: bgruening

tools/3dtrees_standardization/standard.xml

@@ -11,21 +11,21 @@
         #if $mode.task == 'single_file':
             cp '$mode.input' input.laz &&
             Rscript /src/run.R
-            --dataset-path "./input.laz"
-            --output-dir "."
+            --dataset-path ./input.laz
+            --output-dir ./
             --method single_file
             --min-density '$mode.min_density'
             #if $mode.removeable_attributes:
-                --removeable_attributes $mode.removeable_attributes
+                --removeable_attributes '$mode.removeable_attributes'
             #end if
         #else:
-            mkdir -p input_files &&
+            mkdir -p ./input_files &&
             #for $f in $mode.input_collection
-                cp '$f' ./input_files/${f.element_identifier}.laz' &&
+                cp '$f' ./input_files/'${f.element_identifier}.laz' &&
             #end for
             Rscript /src/run.R
-            --dataset-path "./input_files"
-            --output-dir "."
+            --dataset-path ./input_files/
+            --output-dir ./
             --method collection
         #end if
     ]]></command>
@@ -160,4 +160,4 @@ For collection-based workflows:
             @misc{3dtrees_standard, title = {3D Trees Standardization}, author = {3D Trees Project}, year = {2025}}
         </citation>
     </citations>
-</tool>
+</tool>