Updating GH workflow actions versios

Author: mathieulemieux

.github/workflows/compose-test.yml

@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
     name: test docker-compose start
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - run: mkdir -p databases/{postgres,orientdb}/{backup,data}
       - run: mkdir keys
       - run: docker-compose -f "docker-compose.dev.yml" up -d --build

.github/workflows/npm-test.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     name: docker build
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - name: build the keycloak docker container
         run: |
           docker build --file demo/Dockerfile.auth --tag bcgsc/pori-auth .
@@ -21,11 +21,11 @@ jobs:
         python-version: [3.8]
     steps:
     - name: checkout
-      uses: actions/checkout@v1
+      uses: actions/checkout@v4
       with:
         submodules: true
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
     - name: install dependencies

.github/workflows/publish-docs.yml

@@ -13,11 +13,11 @@ jobs:
         python-version: [3.8]
     steps:
     - name: checkout
-      uses: actions/checkout@v1
+      uses: actions/checkout@v4
       with:
         submodules: true
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
     - name: install dependencies
@@ -27,7 +27,7 @@ jobs:
     - run: bash docs/build_external.sh
     - run: mkdocs build
     - name: Deploy
-      uses: peaceiris/actions-gh-pages@v3
+      uses: peaceiris/actions-gh-pages@v4
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: ./dist