update docker compose

Author: sshugsc

docker-compose.dev.yml

@@ -42,6 +42,7 @@ services:
       - source: ./databases/orientdb/backup
         target: /orientdb/backup
         type: bind
+    user: "${UID}:${GID}"
   graphkb_api:
     image: bcgsc/pori-graphkb-api:latest
     ports:
@@ -139,7 +140,7 @@ services:
     image: bcgsc/pori-ipr-api:latest
     command: npm start
     ports:
-      - 8081:8080
+      - 8082:8082
     environment:
       IPR_DATABASE_HOSTNAME: ipr_db
       IPR_DATABASE_NAME: ipr_demo
@@ -176,7 +177,7 @@ services:
     environment:
       KEYCLOAK_REALM: PORI
       # customize settings below
-      API_BASE_URL: http://localhost:8081/api
+      API_BASE_URL: http://localhost:8082/api
       GRAPHKB_URL: http://localhost:5000
       KEYCLOAK_URL: http://localhost:8888/auth
       PUBLIC_PATH: /

docker-compose.prod.yml

@@ -18,7 +18,7 @@ services:
         target: /orientdb/backup
         type: bind
   graphkb_api:
-    image: bcgsc/pori-graphkb-api:v3.13.3
+    image: bcgsc/pori-graphkb-api:v3.15.2
     ports:
       - 8080:8080
     environment:
@@ -48,7 +48,7 @@ services:
       timeout: 10s
       retries: 5
   graphkb_client:
-    image: bcgsc/pori-graphkb-client:v4.2.2
+    image: bcgsc/pori-graphkb-client:v4.3.2
     environment:
       KEYCLOAK_REALM: PORI
       KEYCLOAK_CLIENT_ID: GraphKB
@@ -65,7 +65,7 @@ services:
       - app-network
     restart: always
   ipr_db:
-    image: bcgsc/pori-ipr-demodb:v7.2.1
+    image: bcgsc/pori-ipr-demodb:v8.2.0
     restart: always
     environment:
       DATABASE_NAME: ipr_demo
@@ -107,7 +107,7 @@ services:
       - app-network
     restart: always
   ipr_api:
-    image: bcgsc/pori-ipr-api:v7.2.1
+    image: bcgsc/pori-ipr-api:v8.2.0
     ports:
       - 8081:8080
     environment:
@@ -141,7 +141,7 @@ services:
       timeout: 10s
       retries: 5
   ipr_client:
-    image: bcgsc/pori-ipr-client:v6.6.3
+    image: bcgsc/pori-ipr-client:v7.1.0
     environment:
       KEYCLOAK_REALM: PORI
       # customize settings below

docs/install.md

@@ -9,7 +9,7 @@ Most of the servers are auto-started together with docker-compose but the keyclo
 
     If this is not your first time setting up or running these instructions see the [update instructions](#updating-an-existing-demo-install) instead
 
-Start by cloning this repository which contains the default docker compose configs (`docker-compose.yml` and `docker-compose.dev.yml`)
+Start by cloning this repository which contains the default docker compose configs (`docker-compose.dev.yml`)
 
 ```bash
 git clone https://github.com/bcgsc/pori.git
@@ -53,7 +53,7 @@ mkdir keys
 Next, use docker-compose to start the DB, API, and client servers. The paths/URLs in the docker-compose.yml file should be adjusted to match your deployment. In our demo deployment we have a proxy pass set up from the configured ports to handle the https layer
 
 ```bash
-docker-compose -f docker-compose.dev.yml up -d --build --remove-orphans
+docker compose -f docker-compose.dev.yml up -d --build --remove-orphans
 ```
 
 This will start the following services