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seq_8hpp_source.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<title>btllib: include/btllib/seq.hpp Source File</title>
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<div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span> </div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#ifndef BTLLIB_SEQ_HPP</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#define BTLLIB_SEQ_HPP</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span> </div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include "btllib/status.hpp"</span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span> </div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include <string></span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span> </div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacebtllib.html">btllib</a> {</div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="keyword">extern</span> <span class="keyword">const</span> <span class="keywordtype">char</span> COMPLEMENTS[256];</div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="keyword">extern</span> <span class="keyword">const</span> <span class="keywordtype">char</span> AMINO_ACIDS[256];</div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="keyword">extern</span> <span class="keyword">const</span> <span class="keywordtype">char</span> CAPITALS[256];</div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span> </div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="keywordtype">void</span></div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"><a class="line" href="namespacebtllib.html#a0c9cb0705283e0519330f79629cdc738"> 23</a></span><a class="code hl_function" href="namespacebtllib.html#a0c9cb0705283e0519330f79629cdc738">reverse_complement</a>(std::string& seq);</div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> </div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span>std::string</div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"><a class="line" href="namespacebtllib.html#abfd77a3465be4993f797a31a3b2a285b"> 34</a></span><a class="code hl_function" href="namespacebtllib.html#abfd77a3465be4993f797a31a3b2a285b">get_reverse_complement</a>(<span class="keyword">const</span> std::string& seq);</div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span> </div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span>} <span class="comment">// namespace btllib</span></div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span><span class="preprocessor">#endif</span></div>
<div class="ttc" id="anamespacebtllib_html"><div class="ttname"><a href="namespacebtllib.html">btllib</a></div><div class="ttdef"><b>Definition</b> aahash.hpp:12</div></div>
<div class="ttc" id="anamespacebtllib_html_a0c9cb0705283e0519330f79629cdc738"><div class="ttname"><a href="namespacebtllib.html#a0c9cb0705283e0519330f79629cdc738">btllib::reverse_complement</a></div><div class="ttdeci">void reverse_complement(std::string &seq)</div></div>
<div class="ttc" id="anamespacebtllib_html_abfd77a3465be4993f797a31a3b2a285b"><div class="ttname"><a href="namespacebtllib.html#abfd77a3465be4993f797a31a3b2a285b">btllib::get_reverse_complement</a></div><div class="ttdeci">std::string get_reverse_complement(const std::string &seq)</div></div>
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