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nthash_spacedseeds_8cpp-example.html
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<title>btllib: nthash_spacedseeds.cpp</title>
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<div class="headertitle"><div class="title">nthash_spacedseeds.cpp</div></div>
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<p>An example of generated hashes with spaced seeds.</p>
<div class="fragment"><div class="line"><span class="preprocessor">#include "btllib/nthash.hpp"</span></div>
<div class="line"> </div>
<div class="line"><span class="preprocessor">#include <iostream></span></div>
<div class="line"><span class="preprocessor">#include <string></span></div>
<div class="line"><span class="preprocessor">#include <vector></span></div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span></div>
<div class="line">main()</div>
<div class="line">{</div>
<div class="line"> std::string seq = <span class="stringliteral">"ACGTACGT"</span>;</div>
<div class="line"> std::vector<std::string> seeds = { <span class="stringliteral">"1001"</span>, <span class="stringliteral">"1111"</span> };</div>
<div class="line"> <span class="keywordtype">unsigned</span> num_hashes = 2;</div>
<div class="line"> <a id="_a0" name="_a0"></a><a class="code hl_class" href="classbtllib_1_1SeedNtHash.html">btllib::SeedNtHash</a> nthash(seq, seeds, num_hashes, 4);</div>
<div class="line"> <span class="keywordflow">while</span> (nthash.<a id="a1" name="a1"></a><a class="code hl_function" href="classbtllib_1_1SeedNtHash.html#aa817b8acaf7c57d7be8ce47fcf5ac758">roll</a>()) {</div>
<div class="line"> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i < seeds.size() * num_hashes; i++) {</div>
<div class="line"> std::cout << std::hex << <span class="stringliteral">"0x"</span> << nthash.<a id="a2" name="a2"></a>hashes()[i] << <span class="stringliteral">" "</span>;</div>
<div class="line"> }</div>
<div class="line"> std::cout << std::endl;</div>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="ttc" id="aclassbtllib_1_1SeedNtHash_html"><div class="ttname"><a href="classbtllib_1_1SeedNtHash.html">btllib::SeedNtHash</a></div><div class="ttdef"><b>Definition</b> nthash.hpp:300</div></div>
<div class="ttc" id="aclassbtllib_1_1SeedNtHash_html_aa817b8acaf7c57d7be8ce47fcf5ac758"><div class="ttname"><a href="classbtllib_1_1SeedNtHash.html#aa817b8acaf7c57d7be8ce47fcf5ac758">btllib::SeedNtHash::roll</a></div><div class="ttdeci">bool roll()</div></div>
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