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classbtllib_1_1RandomSequenceGenerator.html
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<title>btllib: btllib::RandomSequenceGenerator Class Reference</title>
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<a href="#pub-types">Public Types</a> |
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<div class="headertitle"><div class="title">btllib::RandomSequenceGenerator Class Reference</div></div>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-types" name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a805a573a8cd5ae8a689d54cff804ff3e"><td class="memItemLeft" align="right" valign="top"><a id="a805a573a8cd5ae8a689d54cff804ff3e" name="a805a573a8cd5ae8a689d54cff804ff3e"></a>enum  </td><td class="memItemRight" valign="bottom"><b>SequenceType</b> { <b>DNA</b>
, <b>RNA</b>
, <b>PROTEIN</b>
}</td></tr>
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<tr class="memitem:a6d9ea7d83f3f21f64ff79020dfc38538"><td class="memItemLeft" align="right" valign="top"><a id="a6d9ea7d83f3f21f64ff79020dfc38538" name="a6d9ea7d83f3f21f64ff79020dfc38538"></a>enum  </td><td class="memItemRight" valign="bottom"><b>Masking</b> { <b>NONE</b>
, <b>SOFT</b>
, <b>HARD</b>
}</td></tr>
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<tr class="memitem:a38515aaa3da32b71c866dfc58a3eac4b"><td class="memItemLeft" align="right" valign="top">std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="classbtllib_1_1RandomSequenceGenerator.html#a38515aaa3da32b71c866dfc58a3eac4b">generate</a> (size_t length)</td></tr>
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<h2 class="groupheader">Constructor & Destructor Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a9dd080136218569ca55fd471b166c500">◆ </a></span>RandomSequenceGenerator()</h2>
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<td class="memname">btllib::RandomSequenceGenerator::RandomSequenceGenerator </td>
<td>(</td>
<td class="paramtype">SequenceType </td>
<td class="paramname"><em>type</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">Masking </td>
<td class="paramname"><em>masking</em> = <code>NONE</code> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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<p >Construct a random sequence generator object.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">type</td><td>Sequence type (DNA, RNA, or protein) </td></tr>
<tr><td class="paramname">masking</td><td>If set to SOFT, lower-case values will also be generated. If HARD, the sequences will include N/X positions. </td></tr>
</table>
</dd>
</dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a38515aaa3da32b71c866dfc58a3eac4b">◆ </a></span>generate()</h2>
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<td class="memname">std::string btllib::RandomSequenceGenerator::generate </td>
<td>(</td>
<td class="paramtype">size_t </td>
<td class="paramname"><em>length</em></td><td>)</td>
<td></td>
</tr>
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<p >Generate a new random sequence.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">length</td><td>Sequence length </td></tr>
</table>
</dd>
</dl>
</div>
</div>
<hr/>The documentation for this class was generated from the following file:<ul>
<li>include/btllib/<a class="el" href="random__seq__generator_8hpp_source.html">random_seq_generator.hpp</a></li>
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