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classbtllib_1_1MIBloomFilter.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<title>btllib: btllib::MIBloomFilter< T > Class Template Reference</title>
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<li class="navelem"><a class="el" href="namespacebtllib.html">btllib</a></li><li class="navelem"><a class="el" href="classbtllib_1_1MIBloomFilter.html">MIBloomFilter</a></li> </ul>
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<div class="header">
<div class="summary">
<a href="#pub-methods">Public Member Functions</a> |
<a href="#pub-static-methods">Static Public Member Functions</a> |
<a href="#pub-static-attribs">Static Public Attributes</a> |
<a href="classbtllib_1_1MIBloomFilter-members.html">List of all members</a> </div>
<div class="headertitle"><div class="title">btllib::MIBloomFilter< T > Class Template Reference</div></div>
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<div class="contents">
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-methods" name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:ad8279210a521e609a35b3cd69f4900c7"><td class="memItemLeft" align="right" valign="top"><a id="ad8279210a521e609a35b3cd69f4900c7" name="ad8279210a521e609a35b3cd69f4900c7"></a>
 </td><td class="memItemRight" valign="bottom"><b>MIBloomFilter</b> (unsigned hash_num, unsigned kmer_size, sdsl::bit_vector &bv, const std::vector< std::string > &seeds=std::vector< std::string >(0))</td></tr>
<tr class="separator:ad8279210a521e609a35b3cd69f4900c7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aebfa52d9ee50c19f650dc7e81010b94a"><td class="memItemLeft" align="right" valign="top"><a id="aebfa52d9ee50c19f650dc7e81010b94a" name="aebfa52d9ee50c19f650dc7e81010b94a"></a>
 </td><td class="memItemRight" valign="bottom"><b>MIBloomFilter</b> (const std::string &filter_file_path)</td></tr>
<tr class="separator:aebfa52d9ee50c19f650dc7e81010b94a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a307db9aef904be2d88f9dfff2627bc6b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="classbtllib_1_1MIBloomFilter.html#a307db9aef904be2d88f9dfff2627bc6b">store</a> (std::string const &filter_file_path) const</td></tr>
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bool </td><td class="memItemRight" valign="bottom"><b>insert</b> (const uint64_t *hashes, const bool *strand, T val, unsigned max)</td></tr>
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bool </td><td class="memItemRight" valign="bottom"><b>insert</b> (const uint64_t *hashes, T value, unsigned max)</td></tr>
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void </td><td class="memItemRight" valign="bottom"><b>saturate</b> (const uint64_t *hashes)</td></tr>
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std::vector< T > </td><td class="memItemRight" valign="bottom"><b>at</b> (const uint64_t *hashes, bool &saturated, unsigned max_miss=0)</td></tr>
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unsigned </td><td class="memItemRight" valign="bottom"><b>at_rank</b> (const uint64_t *hashes, std::vector< uint64_t > &rank_pos, std::vector< bool > &hits, unsigned max_miss) const</td></tr>
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bool </td><td class="memItemRight" valign="bottom"><b>at_rank</b> (const uint64_t *hashes, std::vector< uint64_t > &rank_pos) const</td></tr>
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std::vector< uint64_t > </td><td class="memItemRight" valign="bottom"><b>get_rank_pos</b> (const uint64_t *hashes) const</td></tr>
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uint64_t </td><td class="memItemRight" valign="bottom"><b>get_rank_pos</b> (const uint64_t hash) const</td></tr>
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const std::vector< std::vector< unsigned > > & </td><td class="memItemRight" valign="bottom"><b>get_seed_values</b> () const</td></tr>
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unsigned </td><td class="memItemRight" valign="bottom"><b>get_kmer_size</b> () const</td></tr>
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unsigned </td><td class="memItemRight" valign="bottom"><b>get_hash_num</b> () const</td></tr>
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size_t </td><td class="memItemRight" valign="bottom"><b>get_id_counts</b> (std::vector< size_t > &counts) const</td></tr>
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size_t </td><td class="memItemRight" valign="bottom"><b>get_id_counts_strand</b> (std::vector< size_t > &counts) const</td></tr>
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size_t </td><td class="memItemRight" valign="bottom"><b>get_pop</b> () const</td></tr>
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size_t </td><td class="memItemRight" valign="bottom"><b>get_pop_non_zero</b> () const</td></tr>
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T </td><td class="memItemRight" valign="bottom"><b>check_values</b> (T max_val) const</td></tr>
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size_t </td><td class="memItemRight" valign="bottom"><b>get_pop_saturated</b> () const</td></tr>
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size_t </td><td class="memItemRight" valign="bottom"><b>size</b> () const</td></tr>
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<tr class="memitem:a5dbb61f64d7eb118c9cbeffcfa87d637"><td class="memItemLeft" align="right" valign="top"><a id="a5dbb61f64d7eb118c9cbeffcfa87d637" name="a5dbb61f64d7eb118c9cbeffcfa87d637"></a>
void </td><td class="memItemRight" valign="bottom"><b>set_data</b> (uint64_t pos, T id)</td></tr>
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void </td><td class="memItemRight" valign="bottom"><b>saturate_data</b> (uint64_t pos)</td></tr>
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void </td><td class="memItemRight" valign="bottom"><b>set_data_if_empty</b> (uint64_t pos, T id)</td></tr>
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std::vector< T > </td><td class="memItemRight" valign="bottom"><b>get_data</b> (const std::vector< uint64_t > &rank_pos) const</td></tr>
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T </td><td class="memItemRight" valign="bottom"><b>get_data</b> (uint64_t rank) const</td></tr>
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double </td><td class="memItemRight" valign="bottom"><b>calc_frame_probs</b> (std::vector< double > &frame_probs, unsigned allowed_miss)</td></tr>
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double </td><td class="memItemRight" valign="bottom"><b>calc_frame_probs_strand</b> (std::vector< double > &frame_probs, unsigned allowed_miss)</td></tr>
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="pub-static-methods" name="pub-static-methods"></a>
Static Public Member Functions</h2></td></tr>
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static double </td><td class="memItemRight" valign="bottom"><b>calc_prob_single_frame</b> (double occupancy, unsigned hash_num, double freq, unsigned allowed_misses)</td></tr>
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static double </td><td class="memItemRight" valign="bottom"><b>calc_prob_single</b> (double occupancy, double freq)</td></tr>
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static size_t </td><td class="memItemRight" valign="bottom"><b>calc_optimal_size</b> (size_t entries, unsigned hash_num, double occupancy)</td></tr>
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static unsigned </td><td class="memItemRight" valign="bottom"><b>insert</b> (sdsl::bit_vector &bv, const uint64_t *hash_values, unsigned hash_num)</td></tr>
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Static Public Attributes</h2></td></tr>
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static const T </td><td class="memItemRight" valign="bottom"><b>MASK</b> = 1 << (sizeof(T) * 8 - 1)</td></tr>
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static const T </td><td class="memItemRight" valign="bottom"><b>ANTI_MASK</b> = (T)~MASK</td></tr>
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static const T </td><td class="memItemRight" valign="bottom"><b>STRAND</b> = 1 << (sizeof(T) * 8 - 2)</td></tr>
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static const T </td><td class="memItemRight" valign="bottom"><b>ANTI_STRAND</b> = (T)~STRAND</td></tr>
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static const T </td><td class="memItemRight" valign="bottom"><b>ID_MASK</b> = ANTI_STRAND & ANTI_MASK</td></tr>
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static const unsigned </td><td class="memItemRight" valign="bottom"><b>BLOCKSIZE</b> = 512</td></tr>
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<h2 class="groupheader">Member Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a307db9aef904be2d88f9dfff2627bc6b">◆ </a></span>store()</h2>
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template<typename T > </div>
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<td class="memname">void <a class="el" href="classbtllib_1_1MIBloomFilter.html">btllib::MIBloomFilter</a>< T >::store </td>
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<td class="paramtype">std::string const & </td>
<td class="paramname"><em>filter_file_path</em></td><td>)</td>
<td> const</td>
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<p >BLOCKSIZE) / 8</p>
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<hr/>The documentation for this class was generated from the following file:<ul>
<li>include/btllib/<a class="el" href="mi__bloom__filter_8hpp_source.html">mi_bloom_filter.hpp</a></li>
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