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<li class="navelem"><a class="el" href="dir_d44c64559bbebec7f509842c48db8b23.html">include</a></li><li class="navelem"><a class="el" href="dir_dac4a39c357be6486088762b32ed9e04.html">btllib</a></li> </ul>
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<div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#ifndef BTLLIB_AAHASH_HPP</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="preprocessor">#define BTLLIB_AAHASH_HPP</span></div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span> </div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include <cstdint></span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include <cstring></span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include <limits></span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="preprocessor">#include <memory></span></div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include <string></span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span><span class="preprocessor">#include <string_view></span></div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="preprocessor">#include <vector></span></div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span> </div>
<div class="foldopen" id="foldopen00012" data-start="{" data-end="}">
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"><a class="line" href="namespacebtllib.html"> 12</a></span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespacebtllib.html">btllib</a> {</div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span> </div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="keyword">using </span>SpacedSeed = std::vector<unsigned>;</div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span> </div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="keyword">inline</span> std::vector<SpacedSeed></div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span>aa_parse_seeds(<span class="keyword">const</span> std::vector<std::string>& seeds)</div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span>{</div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span> std::vector<SpacedSeed> seed_vec;</div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& seed : seeds) {</div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span> SpacedSeed seed_vec_tmp;</div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span>& c : seed) {</div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> seed_vec_tmp.push_back((<span class="keywordtype">unsigned</span>)(c - <span class="charliteral">'0'</span>));</div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> }</div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span> seed_vec.push_back(seed_vec_tmp);</div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span> }</div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span> <span class="keywordflow">return</span> seed_vec;</div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span>}</div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span><span class="keyword">class </span><a class="code hl_class" href="classbtllib_1_1AAHash.html">AAHash</a>;</div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span> </div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span><span class="keyword">class </span><a class="code hl_class" href="classbtllib_1_1SeedAAHash.html">SeedAAHash</a>;</div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> </div>
<div class="foldopen" id="foldopen00034" data-start="{" data-end="};">
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"><a class="line" href="classbtllib_1_1AAHash.html"> 34</a></span><span class="keyword">class </span><a class="code hl_class" href="classbtllib_1_1AAHash.html">AAHash</a></div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span>{</div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span> <span class="keyword">static</span> <span class="keyword">constexpr</span> <span class="keyword">const</span> <span class="keywordtype">char</span>* HASH_FN_NAME = <span class="stringliteral">"aahash1"</span>;</div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span><span class="keyword">private</span>:</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span> <span class="keyword">friend</span> <span class="keyword">class </span><a class="code hl_class" href="classbtllib_1_1SeedAAHash.html">SeedAAHash</a>;</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span> </div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span> <span class="keywordtype">bool</span> init();</div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span> </div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> <span class="keyword">const</span> <span class="keywordtype">char</span>* seq;</div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span> <span class="keywordtype">size_t</span> seq_len;</div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span> <span class="keyword">const</span> uint8_t hash_num;</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span> <span class="keyword">const</span> uint16_t k;</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="keywordtype">unsigned</span> level;</div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> <span class="keywordtype">size_t</span> pos;</div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="keywordtype">bool</span> initialized = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span> std::unique_ptr<uint64_t[]> hashes_array;</div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> </div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span><span class="keyword">public</span>:</div>
<div class="foldopen" id="foldopen00063" data-start="{" data-end="}">
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"><a class="line" href="classbtllib_1_1AAHash.html#a2edba2dba416e5913a9867fec2fd5444"> 63</a></span> <a class="code hl_function" href="classbtllib_1_1AAHash.html#a2edba2dba416e5913a9867fec2fd5444">AAHash</a>(std::string_view seq,</div>
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> uint8_t hash_num,</div>
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> uint16_t k,</div>
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> <span class="keywordtype">unsigned</span> level,</div>
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <span class="keywordtype">size_t</span> pos = 0)</div>
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> : seq(seq.data())</div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> , seq_len(seq.size())</div>
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> , hash_num(hash_num)</div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> , k(k)</div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> , level(level)</div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> , pos(pos)</div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> , hashes_array(new uint64_t[hash_num])</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> {</div>
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> }</div>
</div>
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"> 77</span> </div>
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> <a class="code hl_function" href="classbtllib_1_1AAHash.html#a2edba2dba416e5913a9867fec2fd5444">AAHash</a>(<span class="keyword">const</span> <a class="code hl_class" href="classbtllib_1_1AAHash.html">AAHash</a>& aahash)</div>
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span> : seq(aahash.seq)</div>
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> , seq_len(aahash.seq_len)</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> , hash_num(aahash.hash_num)</div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> , k(aahash.k)</div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> , level(aahash.level)</div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> , pos(aahash.pos)</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> , initialized(aahash.initialized)</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> , hashes_array(new uint64_t[hash_num])</div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> {</div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> std::memcpy(hashes_array.get(),</div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> aahash.hashes_array.get(),</div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> hash_num * <span class="keyword">sizeof</span>(uint64_t));</div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span> }</div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <a class="code hl_function" href="classbtllib_1_1AAHash.html#a2edba2dba416e5913a9867fec2fd5444">AAHash</a>(<a class="code hl_function" href="classbtllib_1_1AAHash.html#a2edba2dba416e5913a9867fec2fd5444">AAHash</a>&&) = <span class="keywordflow">default</span>;</div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> </div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"><a class="line" href="classbtllib_1_1AAHash.html#a94a48eac3e812204810c3182f55b122f"> 108</a></span> <span class="keywordtype">bool</span> <a class="code hl_function" href="classbtllib_1_1AAHash.html#a94a48eac3e812204810c3182f55b122f">roll</a>();</div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> </div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> <span class="keyword">const</span> uint64_t* hashes()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> hashes_array.get(); }</div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> <span class="keywordtype">size_t</span> get_pos()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> pos; }</div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> <span class="keywordtype">unsigned</span> get_hash_num()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> hash_num; }</div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> <span class="keywordtype">unsigned</span> get_k()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> k; }</div>
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> uint64_t get_forward_hash()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> hashes_array[0]; }</div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> <span class="keywordtype">unsigned</span> get_level()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> level; }</div>
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> <span class="keyword">const</span> <span class="keywordtype">char</span>* get_seq()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> seq; }</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span>};</div>
</div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="foldopen" id="foldopen00119" data-start="{" data-end="};">
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"><a class="line" href="classbtllib_1_1SeedAAHash.html"> 119</a></span><span class="keyword">class </span><a class="code hl_class" href="classbtllib_1_1SeedAAHash.html">SeedAAHash</a></div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span>{</div>
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span><span class="keyword">private</span>:</div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> <a class="code hl_class" href="classbtllib_1_1AAHash.html">AAHash</a> aahash;</div>
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> <span class="keyword">const</span> <span class="keywordtype">unsigned</span> hash_num_per_seed;</div>
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> std::unique_ptr<uint64_t[]> hashes_array;</div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> std::vector<SpacedSeed> seeds;</div>
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> <span class="keywordtype">bool</span> verify_seed();</div>
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> <span class="keywordtype">void</span> init();</div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> </div>
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span><span class="keyword">public</span>:</div>
<div class="foldopen" id="foldopen00142" data-start="{" data-end="}">
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"><a class="line" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb"> 142</a></span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>(<span class="keyword">const</span> <span class="keywordtype">char</span>* seq,</div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> <span class="keyword">const</span> std::vector<SpacedSeed>& seeds,</div>
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> <span class="keywordtype">unsigned</span> hash_num_per_seed,</div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span> <span class="keywordtype">unsigned</span> k,</div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> <span class="keywordtype">size_t</span> pos = 0)</div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"> 147</span> : aahash(seq, 1, k, 1, pos)</div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> , hash_num_per_seed(hash_num_per_seed)</div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> , hashes_array(new uint64_t[hash_num_per_seed * seeds.size()])</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> , seeds(seeds)</div>
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> {</div>
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> init();</div>
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> }</div>
</div>
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>(<span class="keyword">const</span> std::string& seq,</div>
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> <span class="keyword">const</span> std::vector<SpacedSeed>& seeds,</div>
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> <span class="keywordtype">unsigned</span> hash_num_per_seed,</div>
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> <span class="keywordtype">unsigned</span> k,</div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> <span class="keywordtype">size_t</span> pos = 0)</div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> : aahash(seq, 1, k, 1, pos)</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> , hash_num_per_seed(hash_num_per_seed)</div>
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> , hashes_array(new uint64_t[hash_num_per_seed * seeds.size()])</div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> , seeds(seeds)</div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> {</div>
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> init();</div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> }</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>(<span class="keyword">const</span> <span class="keywordtype">char</span>* seq,</div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> <span class="keyword">const</span> std::vector<std::string>& seeds,</div>
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> <span class="keywordtype">unsigned</span> hash_num_per_seed,</div>
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> <span class="keywordtype">unsigned</span> k,</div>
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> <span class="keywordtype">size_t</span> pos = 0)</div>
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> : aahash(seq, 1, k, 1, pos)</div>
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> , hash_num_per_seed(hash_num_per_seed)</div>
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> , hashes_array(new uint64_t[hash_num_per_seed * seeds.size()])</div>
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> , seeds(aa_parse_seeds(seeds))</div>
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> {</div>
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span> init();</div>
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> }</div>
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>(<span class="keyword">const</span> std::string& seq,</div>
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <span class="keyword">const</span> std::vector<std::string>& seeds,</div>
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> <span class="keywordtype">unsigned</span> hash_num_per_seed,</div>
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> <span class="keywordtype">unsigned</span> k,</div>
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> <span class="keywordtype">size_t</span> pos = 0)</div>
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> : aahash(seq, 1, k, 1, pos)</div>
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> , hash_num_per_seed(hash_num_per_seed)</div>
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> , hashes_array(new uint64_t[hash_num_per_seed * seeds.size()])</div>
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> , seeds(aa_parse_seeds(seeds))</div>
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> {</div>
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> init();</div>
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> }</div>
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> </div>
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>(<span class="keyword">const</span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>& seed_aahash)</div>
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> : aahash(seed_aahash.aahash)</div>
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> , hash_num_per_seed(seed_aahash.hash_num_per_seed)</div>
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> , hashes_array(new uint64_t[hash_num_per_seed * seed_aahash.seeds.size()])</div>
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> , seeds(seed_aahash.seeds)</div>
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> {</div>
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> std::memcpy(hashes_array.get(),</div>
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> seed_aahash.hashes_array.get(),</div>
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> hash_num_per_seed * seeds.size() * <span class="keyword">sizeof</span>(uint64_t));</div>
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> }</div>
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>(<a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">SeedAAHash</a>&&) = <span class="keywordflow">default</span>;</div>
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> </div>
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"><a class="line" href="classbtllib_1_1SeedAAHash.html#ac189ce494d185b0e224b05902d4b7a54"> 216</a></span> <span class="keywordtype">bool</span> <a class="code hl_function" href="classbtllib_1_1SeedAAHash.html#ac189ce494d185b0e224b05902d4b7a54">roll</a>();</div>
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> </div>
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> <span class="keyword">const</span> uint64_t* hashes()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> hashes_array.get(); }</div>
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> </div>
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> <span class="keywordtype">size_t</span> get_pos()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> aahash.get_pos(); }</div>
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> <span class="keywordtype">unsigned</span> get_hash_num()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> aahash.get_hash_num(); }</div>
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <span class="keywordtype">unsigned</span> get_hash_num_per_seed()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> hash_num_per_seed; }</div>
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> <span class="keywordtype">unsigned</span> get_k()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> aahash.get_k(); }</div>
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span>};</div>
</div>
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> </div>
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span>} <span class="comment">// namespace btllib</span></div>
</div>
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> </div>
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span><span class="preprocessor">#endif</span></div>
<div class="ttc" id="aclassbtllib_1_1AAHash_html"><div class="ttname"><a href="classbtllib_1_1AAHash.html">btllib::AAHash</a></div><div class="ttdef"><b>Definition</b> aahash.hpp:35</div></div>
<div class="ttc" id="aclassbtllib_1_1AAHash_html_a2edba2dba416e5913a9867fec2fd5444"><div class="ttname"><a href="classbtllib_1_1AAHash.html#a2edba2dba416e5913a9867fec2fd5444">btllib::AAHash::AAHash</a></div><div class="ttdeci">AAHash(std::string_view seq, uint8_t hash_num, uint16_t k, unsigned level, size_t pos=0)</div><div class="ttdef"><b>Definition</b> aahash.hpp:63</div></div>
<div class="ttc" id="aclassbtllib_1_1AAHash_html_a94a48eac3e812204810c3182f55b122f"><div class="ttname"><a href="classbtllib_1_1AAHash.html#a94a48eac3e812204810c3182f55b122f">btllib::AAHash::roll</a></div><div class="ttdeci">bool roll()</div></div>
<div class="ttc" id="aclassbtllib_1_1SeedAAHash_html"><div class="ttname"><a href="classbtllib_1_1SeedAAHash.html">btllib::SeedAAHash</a></div><div class="ttdef"><b>Definition</b> aahash.hpp:120</div></div>
<div class="ttc" id="aclassbtllib_1_1SeedAAHash_html_a920b6430467869782159dc3b6906d8fb"><div class="ttname"><a href="classbtllib_1_1SeedAAHash.html#a920b6430467869782159dc3b6906d8fb">btllib::SeedAAHash::SeedAAHash</a></div><div class="ttdeci">SeedAAHash(const char *seq, const std::vector< SpacedSeed > &seeds, unsigned hash_num_per_seed, unsigned k, size_t pos=0)</div><div class="ttdef"><b>Definition</b> aahash.hpp:142</div></div>
<div class="ttc" id="aclassbtllib_1_1SeedAAHash_html_ac189ce494d185b0e224b05902d4b7a54"><div class="ttname"><a href="classbtllib_1_1SeedAAHash.html#ac189ce494d185b0e224b05902d4b7a54">btllib::SeedAAHash::roll</a></div><div class="ttdeci">bool roll()</div></div>
<div class="ttc" id="anamespacebtllib_html"><div class="ttname"><a href="namespacebtllib.html">btllib</a></div><div class="ttdef"><b>Definition</b> aahash.hpp:12</div></div>
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