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Merge pull request #49 from bcbio/eberdan-patch-1
Update differential_expression.qmd
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02_differential_expression/differential_expression.qmd

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@@ -62,12 +62,13 @@ This code is in this ![](https://img.shields.io/badge/status-stable-green) revis
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```{r load-params, cache = FALSE, message = FALSE, warning=FALSE}
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library(tidyverse)
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library(purrr)
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# 1. Set up input files in this R file (params_de.R)
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source(params$params_file)
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# 2. Set up project file (already done from QC probably)
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source(params$project_file)
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# 3. Load custom functions to load data from coldata/metrics/counts
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map(list.files(params$functions_file, pattern = "*.R$", full.names = T), source) %>% invisible()
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purrr::map(list.files(params$functions_file, pattern = "*.R$", full.names = T), source) %>% invisible()
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# Assign the genome parameter to the object genome
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# IMPORTANT set these values if you are not using the parameters in the header (lines 23-44)

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