Skip to content

Latest commit

 

History

History
95 lines (58 loc) · 2.7 KB

NEWS.md

File metadata and controls

95 lines (58 loc) · 2.7 KB

Version 0.1.0

  • First version

Version 0.1.1

  • A lot of minor tweaks
  • Documentation updates

Version 0.1.2

  • Added functions list_species() and download_feature_information().
  • Split function download_functional_terms() into download_functional_terms() and prepare_functional_terms() to allow for more flexibility with feature identifiers.
  • Wrote new section of the vignette with an advanced example.
  • Added mouse RNA-seq data for the example.
  • Added Ensembl settings for all species in the species.json file.

Version 0.1.3

  • Bug fixes
  • Lazy data recompression

Version 0.1.4

  • Fixed a bug in SelectizeInput
  • Improving the vignette
  • Reducing size of data

Version 0.1.5

  • Fixed missing helpers (pop-up documents when info icon clicked)

Version 0.1.6

  • New feature: a title can be added to the dashboard

Version 0.1.7

  • New feature: additional columns can be provided in metadata to colour points in the feature plot

Version 0.2.0

  • Data structure overhaul - all user data are now packed into one object class dexdash_set or dexdash_list.
  • Allows for multiple data sets, selected from the drop-down menu
  • New functions: dexdash_set() and dexdash_list().

Version 0.2.1

  • Improvements to the documentation
  • Changed column names in example metadata to better reflect the nature of the variable
  • Small tweaks

Version 0.2.2

  • New feature: each plot and table can be now downloaded by clicking the "download" icon
  • Minor improvements to the code

Version 0.2.3

  • A few minor changes

Version 0.2.4

  • Fixed a bug where NAs in any metadata column caused filtering data out in the feature plot

Version 0.2.5

  • Moved all example data to a separate package bartongroup/dexdata to reduce footprint
  • Move the large vignette to a separate directory and created minimal vignette to reduce footprint
  • Fixed a bug in feature info testing
  • Added new run_app arguments to set the startup values of the x- and colour-variables in the feature plot
  • Added ability to provide own FDR column in differential expression table

Version 0.2.6

  • Fixed an issue with mean normalisation in the feature plot that tried to take a logarithm of zero by calculating a log-ratio.
  • Minor tweaks to the plot feature code.
  • Fixing dexdata package references.

Version 0.2.7

  • Bug fix: missing x-axis column error if x_variable argument not specified in run_app.

Version 0.2.8

  • Bug fix: card_body() was missing in three cards.

Version 0.2.9

  • Typo fix
  • Allow for continuous (numeric) variables for x-axis and colour scale in feature plot

Version 0.2.10

  • Changed the default FDR limit from 0.01 to 0.05 (I know!)