prointvar_config.ini

[Global]
# Absolute path working dir
db_root = ./.prointvar
# PDBx/mmCIF files
db_pdbx = pdbx
# SIFTS xml files
db_sifts = sifts
# DSSP related files
db_dssp = dssp
# Arpeggio (Contacts) files
db_contacts = contacts
# Pickled Tables
db_pickled = pickled
# Temporary dir
db_tmp = tmp
# UniProt dir
db_uniprot = uniprot
# STAMP dir
db_stamp = stamp
# CATH dir
db_cath = cath
# Pfam dir
db_pfam = pfam

[WebAddresses]
# PDBe REST API
api_pdbe = http://www.ebi.ac.uk/pdbe/api/
# UniProt Proteins API
api_proteins = https://www.ebi.ac.uk/proteins/api/
# Ensembl REST API
api_ensembl = http://rest.ensembl.org/
# UniProt HTTP
http_uniprot = http://www.uniprot.org/uniprot/
# PDBe HTTP
http_pdbe = http://www.ebi.ac.uk/pdbe/
# CATH HTTP
http_cath = http://www.cathdb.info/version/v4_1_0/
# SIFTS FTP
ftp_sifts = ftp://ftp.ebi.ac.uk/pub/databases/msd/sifts/xml/
# Pfam HTTP
http_pfam = http://pfam.xfam.org/

[ThirdPartyTools]
# DSSP executable
dssp_bin = /path/to/dssp/bin/dssp
# HBPLUS executable
hbplus_bin = /path/to/hbplus/hbplus
# HBPLUS CLEAN executable
clean_bin = /path/to/hbplus/clean
# Reduce executable
reduce_bin = /path/to/reduce/reduce
# Probe executable
probe_bin = /path/to/probe/probe
# Arpeggio excutable (needs Python details below)
arpeggio_bin = /Users/smacgowan/src/arpeggio/arpeggio.py
# Python executable (`which python`)
python_exe = /Users/smacgowan/anaconda/envs/arpeggio/bin/python
# Python path (`echo $PYTHONPATH`)
python_path = /Users/smacgowan/anaconda/envs/arpeggio/python/lib/site-packages/

[UserInfo]
email = username@email.com
username = username