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inbartongroup/ProIntVar (press backspace or delete to remove)

All the db* directories specified in the default config are created in the working directory on first run. I usually want data to be stored gathered in a subfolder folder, so I change this by installing ...
enhancement
  • stuartmac
  • Opened 
    on Nov 21, 2024
  • #19

table_generator is has been yielding FileNotFound errors from the ARPEGGIOrunner (e.g., FileNotFoundError: [Errno 2] No such file or directory: ./pdbx/1exa_new.amam ). Weirdly it will work the second time ...
bug
  • stuartmac
  • Opened 
    on Nov 21, 2017
  • #18

enhancement
  • biomadeira
  • Opened 
    on Sep 27, 2017
  • #15

I noticed that TableMerger.merge() was giving waters and other HETATMs UniProt IDs and ResNums. Eventually I tracked the problem to contacts_mmcif_table_merger: cmtm_test = merger.contacts_mmcif_table_merger(contacts_table, ...
bug
  • stuartmac
  • 2
  • Opened 
    on Sep 13, 2017
  • #12

CLI gives an error due to suppress in Python 2.7: $ ProIntVar download --mmcif 2pah Traceback (most recent call last): File /homes/smacgowan/anaconda2/envs/varalign_dev/bin/ProIntVar , line 11, in ...
enhancement
  • stuartmac
  • 3
  • Opened 
    on Sep 6, 2017
  • #10

If these are not available in the main confid.db_root directory.
enhancement
  • biomadeira
  • 1
  • Opened 
    on Sep 4, 2017
  • #9

I suggest adding the following to the start of prointvar.sifts section. from prointvar.fetchers import download_sifts_from_ebi download_sifts_from_ebi( 2pah )
  • stuartmac
  • 1
  • Opened 
    on Sep 1, 2017
  • #8

So after a fresh install, going through the tutorial I got an error from DSSPrunner. DSSPrunner(inputfile=input_struct, outputfile=output_dssp).write() DSSP could not be created due to an error: ...
bug
  • stuartmac
  • 1
  • Opened 
    on Sep 1, 2017
  • #7
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