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inbartongroup/ProIntVar (press backspace or delete to remove)All the db* directories specified in the default config are created in the working directory on first run.
I usually want data to be stored gathered in a subfolder folder, so I change this by installing ...
enhancement
stuartmac
- Opened on Nov 21, 2024
- #19
table_generator is has been yielding FileNotFound errors from the ARPEGGIOrunner (e.g., FileNotFoundError: [Errno 2] No
such file or directory: ./pdbx/1exa_new.amam ). Weirdly it will work the second time ...
bug
stuartmac
- Opened on Nov 21, 2017
- #18
I noticed that TableMerger.merge() was giving waters and other HETATMs UniProt IDs and ResNums.
Eventually I tracked the problem to contacts_mmcif_table_merger:
cmtm_test = merger.contacts_mmcif_table_merger(contacts_table, ...
bug
stuartmac
- 2
- Opened on Sep 13, 2017
- #12
CLI gives an error due to suppress in Python 2.7:
$ ProIntVar download --mmcif 2pah
Traceback (most recent call last):
File /homes/smacgowan/anaconda2/envs/varalign_dev/bin/ProIntVar , line 11, in ...
enhancement
stuartmac
- 3
- Opened on Sep 6, 2017
- #10
If these are not available in the main confid.db_root directory.
enhancement
biomadeira
- 1
- Opened on Sep 4, 2017
- #9
I suggest adding the following to the start of prointvar.sifts section.
from prointvar.fetchers import download_sifts_from_ebi
download_sifts_from_ebi( 2pah )
stuartmac
- 1
- Opened on Sep 1, 2017
- #8
So after a fresh install, going through the tutorial I got an error from DSSPrunner.
DSSPrunner(inputfile=input_struct, outputfile=output_dssp).write()
DSSP could not be created due to an error: ...
bug
stuartmac
- 1
- Opened on Sep 1, 2017
- #7
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