From 05d75d26cf5d54d81a33cfb30bf58fb874027460 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Fa=CC=81bio=20Madeira?= Date: Mon, 25 Sep 2017 11:54:14 +0100 Subject: [PATCH] Minor bugfixes for the fetchers / test_fetchers. --- prointvar/fetchers.py | 2 +- tests/test_fetchers.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/prointvar/fetchers.py b/prointvar/fetchers.py index d1615ed..fb0ce58 100644 --- a/prointvar/fetchers.py +++ b/prointvar/fetchers.py @@ -77,7 +77,7 @@ def fetch_uniprot_fasta(identifier, cached=False, retry_in=(429,)): url = url_root + url_endpoint b = BioFetcher(url=url, cached=cached, cache_output="{}_fasta.pkl".format(identifier), - json=True, retry_in=retry_in) + json=False, retry_in=retry_in) return b.response diff --git a/tests/test_fetchers.py b/tests/test_fetchers.py index 0a8f4b2..88fce49 100644 --- a/tests/test_fetchers.py +++ b/tests/test_fetchers.py @@ -270,7 +270,7 @@ def fetch_fetch_ensembl_variants_by_id(self): self.assertTrue(r.ok) def fetch_fetch_ensembl_sequence_from_id(self): - r = fetch_ensembl_sequence_from_id(self.ensemblid) + r = self.fetch_ensembl_sequence_from_id(self.ensemblid) self.assertTrue(r.ok) def test_biofetcher_uniprot_fasta(self):