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deep_learning_env.yml
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name: deep_learning_env
channels:
- salilab
- conda-forge
- bioconda
- defaults
dependencies:
- _ipython_minor_entry_point=8.7.0=hb6b4a82_0
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- absl-py=1.3.0=pyhd8ed1ab_0
- aiohttp=3.8.3=py310h5764c6d_1
- aiosignal=1.3.1=pyhd8ed1ab_0
- alsa-lib=1.2.8=h166bdaf_0
- asttokens=2.2.1=pyhd8ed1ab_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=22.1.0=pyh71513ae_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- blinker=1.5=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py310h5764c6d_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.2.0=pyhd8ed1ab_0
- certifi=2022.9.24=pyhd8ed1ab_0
- cffi=1.15.1=py310h255011f_2
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- click=8.1.3=unix_pyhd8ed1ab_2
- contourpy=1.0.6=py310hbf28c38_0
- cryptography=38.0.4=py310h597c629_0
- cycler=0.11.0=pyhd8ed1ab_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.6.4=py310hd8f1fbe_0
- decorator=5.1.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fftw=3.3.10=nompi_hf0379b8_106
- flatbuffers=2.0.7=h27087fc_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.38.0=py310h5764c6d_1
- freetype=2.12.1=hca18f0e_1
- frozenlist=1.3.3=py310h5764c6d_0
- gast=0.4.0=pyh9f0ad1d_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h36c2ea0_2
- glib=2.74.1=h6239696_1
- glib-tools=2.74.1=h6239696_1
- google-auth=2.15.0=pyh1a96a4e_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- grpc-cpp=1.47.1=h05bd8bd_7
- grpcio=1.47.1=py310h5b20944_7
- gst-plugins-base=1.21.2=h3e40eee_0
- gstreamer=1.21.2=hd4edc92_0
- gstreamer-orc=0.4.33=h166bdaf_0
- h5py=3.7.0=nompi_py310h416281c_102
- hdf5=1.12.2=nompi_h2386368_100
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=5.1.0=pyha770c72_0
- ipykernel=6.17.1=pyh210e3f2_0
- ipython=8.7.0=pyh41d4057_0
- jack=1.9.21=h583fa2b_2
- jedi=0.18.2=pyhd8ed1ab_0
- joblib=1.2.0=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- jupyter_client=7.4.8=pyhd8ed1ab_0
- jupyter_core=5.1.0=py310hff52083_0
- keras=2.10.0=py310h06a4308_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.19.3=h3790be6_0
- lame=3.100=h166bdaf_1003
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- lerc=4.0.0=h27087fc_0
- libabseil=20220623.0=cxx17_h48a1fff_5
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcap=2.66=ha37c62d_0
- libcblas=3.9.0=16_linux64_openblas
- libclang=15.0.6=default_h2e3cab8_0
- libclang13=15.0.6=default_h3a83d3e_0
- libcups=2.3.3=h3e49a29_2
- libcurl=7.86.0=h7bff187_1
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.14=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h9b69904_4
- libffi=3.4.2=h7f98852_5
- libflac=1.4.2=h27087fc_0
- libgcc-ng=12.2.0=h65d4601_19
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libgpg-error=1.45=hc0c96e0_0
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libllvm15=15.0.6=h63197d8_0
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h753d276_0
- libpq=15.1=hf695f80_1
- libprotobuf=3.21.10=h6239696_0
- libsndfile=1.1.0=hcb278e6_1
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libsystemd0=252=h2a991cd_0
- libtiff=4.4.0=h55922b4_4
- libtool=2.4.6=h9c3ff4c_1008
- libudev1=252=h166bdaf_0
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.3=h9c3ff4c_1
- markdown=3.4.1=pyhd8ed1ab_0
- markupsafe=2.1.1=py310h5764c6d_2
- matplotlib=3.6.2=py310hff52083_0
- matplotlib-base=3.6.2=py310h8d5ebf3_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mpg123=1.31.1=h27087fc_0
- multidict=6.0.2=py310h5764c6d_2
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.31=haf5c9bc_0
- mysql-libs=8.0.31=h28c427c_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.82=he02c5a1_0
- numpy=1.23.5=py310h53a5b5f_0
- oauthlib=3.2.2=pyhd8ed1ab_0
- openjpeg=2.5.0=h7d73246_1
- openssl=1.1.1s=h0b41bf4_1
- opt_einsum=3.3.0=pyhd8ed1ab_1
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.5.2=py310h769672d_0
- parso=0.8.3=pyhd8ed1ab_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.2.0=py310h454ad03_3
- pip=22.3.1=pyhd8ed1ab_0
- platformdirs=2.5.2=pyhd8ed1ab_1
- ply=3.11=py_1
- prompt-toolkit=3.0.33=pyha770c72_0
- protobuf=4.21.10=py310hd8f1fbe_0
- psutil=5.9.4=py310h5764c6d_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=16.1=h4a94279_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.13.0=pyhd8ed1ab_0
- pyjwt=2.6.0=pyhd8ed1ab_0
- pyopenssl=22.1.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py310h29803b5_2
- pyqt5-sip=12.11.0=py310hd8f1fbe_2
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.8=h257c98d_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-flatbuffers=2.0=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytz=2022.6=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyzmq=24.0.1=py310h330234f_1
- qt-main=5.15.6=hc2de0a7_3
- re2=2022.06.01=h27087fc_1
- readline=8.1.2=h0f457ee_0
- requests=2.28.1=pyhd8ed1ab_1
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- scikit-learn=1.1.3=py310h0c3af53_1
- scipy=1.9.3=py310hdfbd76f_2
- seaborn=0.12.1=hd8ed1ab_0
- seaborn-base=0.12.1=pyhd8ed1ab_0
- setuptools=65.5.1=pyhd8ed1ab_0
- sip=6.7.5=py310hd8f1fbe_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=hbd366e4_2
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.13.5=py310hde88566_2
- tensorboard=2.10.0=py310h06a4308_0
- tensorboard-data-server=0.6.1=py310h597c629_4
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorflow=2.10.0=cpu_py310hd1aba9c_0
- tensorflow-base=2.10.0=cpu_py310hc537a0e_0
- tensorflow-estimator=2.10.0=cpu_py310had6d012_0
- termcolor=2.1.1=pyhd8ed1ab_0
- threadpoolctl=3.1.0=pyh8a188c0_0
- tk=8.6.12=h27826a3_0
- toml=0.10.2=pyhd8ed1ab_0
- tornado=6.2=py310h5764c6d_1
- traitlets=5.6.0=pyhd8ed1ab_0
- typing-extensions=4.4.0=hd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022g=h191b570_0
- unicodedata2=15.0.0=py310h5764c6d_0
- urllib3=1.26.13=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- werkzeug=2.2.2=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- wrapt=1.14.1=py310h5764c6d_1
- xcb-util=0.4.0=h166bdaf_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h166bdaf_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h166bdaf_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xz=5.2.6=h166bdaf_0
- yarl=1.8.1=py310h5764c6d_0
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.11.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h6239696_4
- pip:
- llvmlite==0.39.1
- numba==0.56.4
- pynndescent==0.5.8
- tqdm==4.64.1
- umap-learn==0.5.3
prefix: /cluster/gjb_lab/2394007/miniconda/envs/deep_learning