This is the application specification for service with identifier MSA.
The backend script implementing the application is App-MSA.pl.
The raw JSON file for this specification is MSA.json.
This service performs the following task: Compute the multiple sequence alignment and analyze SNP/variance.
It takes the following parameters:
| id | label | type | required | default value |
|---|---|---|---|---|
| input_status | The input status. | enum | ||
| input_type | The type of input selected. | enum | ||
| fasta_files | group | |||
| select_genomegroup | Genome groups | WS: genome_group | ||
| feature_groups | Feature groups | WS: feature_group | ||
| feature_list | feature list | string | ||
| genome_list | genome list | string | ||
| aligner | multiple sequence aligner | enum | Muscle | |
| alphabet | sequence alphabet | enum | ✔️ | dna |
| fasta_keyboard_input | fasta keyboard input | string | ||
| ref_type | Reference sequence type | enum | none | |
| strategy | auto | |||
| ref_string | reference sequence identity | string | ||
| output_path | Output Folder | folder | ✔️ | |
| output_file | File Basename | wsid | ✔️ |