Application specification: MSA

This is the application specification for service with identifier MSA.

The backend script implementing the application is App-MSA.pl.

The raw JSON file for this specification is MSA.json.

This service performs the following task: Compute the multiple sequence alignment and analyze SNP/variance.

It takes the following parameters:

id	label	type	required	default value
input_status	The input status.	enum
input_type	The type of input selected.	enum
fasta_files		group
select_genomegroup	Genome groups	WS: genome_group
feature_groups	Feature groups	WS: feature_group
feature_list	feature list	string
genome_list	genome list	string
aligner	multiple sequence aligner	enum		Muscle
alphabet	sequence alphabet	enum	✔️	dna
fasta_keyboard_input	fasta keyboard input	string
ref_type	Reference sequence type	enum		none
strategy				auto
ref_string	reference sequence identity	string
output_path	Output Folder	folder	✔️
output_file	File Basename	wsid	✔️

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