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Run and Develop Harmony

Use this guide if you plan on contributing (developing/testing/debugging) Harmony code, or if you need a setup that isn't well suited to the Quick Start.

For developing Harmony on Windows follow this document as well as the information in docs/dev_container/README.md.

Software Requirements

Required:

  • A local copy of this repository. Using git clone is strongly recommended
  • Node.js version 16. We strongly recommend installing NVM to add and manage node versions.
  • Mac OSX, Linux, or similar command line tooling. Harmony is tested to run on OSX >= 10.14 and Amazon Linux 2. Command-line instructions and bash helper files under bin/ are tested on OSX >= 10.14.
  • git - Used to clone this repository
  • Mac:
    • Install [Docker Desktop] https://www.docker.com/products/docker-desktop. Docker Desktop comes bundled with Kubernetes and kubectl. If you encounter issues running kubectl commands, first make sure you are running the version bunedled with Docker Desktop.
    • Run Kubernetes in Docker Desktop by selecting Preferences -> Kubernetes -> Enable Kubernetes
  • Linux / Generic:
    • Install minikube, a single-node Kubernetes cluster useful for local development
    • Install kubectl, a command line interface to Kubernetes.
  • Docker compose version 1.20.0 or greater; preferably the latest version, which is v1.26 or greater.
  • The AWS CLI - Used to interact with both localstack and real AWS accounts
  • SQLite3 commandline - Used to create the local development and test databases. Install using your OS package manager, or download precompiled binaries from SQLite
  • PostgreSQL (required by the pg-native library) - brew install postgresql on OSX
  • Earthdata Login application in UAT
  • envsubst - Used to substitute environment variable placeholders inside configuration files.
  • openssl Read this installation guide if you're a Windows user and openssl is not installed on your machine already.

Highly Recommended:

  • An Amazon Web Services account - Used for testing Harmony against object stores and running Harmony in AWS
  • An editor with syntax awareness of TypeScript. If you do not have this or any preference, consider Visual Studio Code

Optional:

  • awscli-local - CLI helpers for interacting with localstack
  • Python version 3.7 - Useful for locally running and testing harmony-docker and other backend services

Set up Environment

If you have not yet cloned the Harmony repository, run

$ git clone https://github.com/nasa/harmony.git

Ensure envsubst is installed on your system.

For Mac, envsubst is part of the homebrew gettext package. Run

brew install gettext

if you are using homebrew. The version installed by pip is NOT compatible.

*** NOTE FOR M1 MACS ***

If you are running on an M1 Mac, you will have to run Harmony on Rosetta 2 due to some issues with GDAL Node packages. To do this, run this command before following the rest of these instructions.

arch -x86_64 zsh

or

arch -x86_64 bash

Ensure node is available and is the correct version, 16.x.y.

$ node --version
v16.14.2

Ensure npm is available and is version 8 or later.

$ npm --version
8.5.0

If either are not the correct versions and you are using NVM, install them and ensure your PATH is up-to-date by running:

$ nvm install && nvm use

The output should include node 16 and npm 8.

Now using node v16.14.2 (npm v8.5.0)

Be sure to verify the version on the final line to make sure the NVM binary appears first in your PATH.

From the harmony project root, install library dependencies:

$ npm install

Recommended: Add ./node_modules/.bin to your PATH. This will allow you to run binaries from installed node modules. If you choose not to do this, you will need to prefix node module calls with npx, e.g. npx mocha instead of just mocha

Set Up Environment Variables

Harmony uses environment variables for managing much of its configuration. Most of the variables can be defaulted, and harmony provides those defaults suitable for local development in the env-defaults file. In order to set up the remaining variables, run the following from the harmony project root:

$ bin/create-dotenv

The script will create a file named .env in the root project directory containing only those parameters that cannot be defaulted. Open the file and update the values for any of the variables that are currently blank. Detailed information for the environment variables can be found in the env-defaults file.

Harmony reads both the env-defaults and .env files at startup to determine the configuration. To override any default values, set the desired value in the .env file. There is no need to duplicate parameters in the .env file if using the default value.

Specifically, you will need to add the following to your .env file: Mac OS X

LOCALSTACK_HOST=localhost
WORK_ITEM_UPDATE_QUEUE_URL=http://localhost:4566/queue/work-item-update-queue
LARGE_WORK_ITEM_UPDATE_QUEUE_URL=http://localhost:4566/queue/large-work-item-update-queue
BACKEND_HOST=host.docker.internal
CALLBACK_URL_ROOT=http://host.docker.internal:3001

Linux

LOCALSTACK_HOST=localhost
WORK_ITEM_UPDATE_QUEUE_URL=http://localhost:4566/queue/work-item-update-queue
LARGE_WORK_ITEM_UPDATE_QUEUE_URL=http://localhost:4566/queue/large-work-item-update-queue
BACKEND_HOST=localhost
CALLBACK_URL_ROOT=http://localhost:3001

(minikube only) Configuring the callback URL for backend services

You can skip this step if you are using the default docker driver for minikube and set CALLBACK_URL_ROOT as described in the example dotenv file. If you are using a different driver such as virtualbox you may need to execute the following command to get the IP address minikube has bridged to localhost:

minikube ssh grep host.minikube.internal /etc/hosts | cut -f1

This should print out an IP address. Use this in your .env file to specify the CALLBACK_URL_ROOT value, e.g., CALLBACK_URL_ROOT=http://192.168.65.2:4001.

Set Up A Database

To setup a sqlite3 database with the correct schema for local execution, run

$ bin/create-database development

This should be run any time the versioned contents of the db/db.sql file change.

This will create a file, db/development.sqlite3, which will contain your local data. You can delete the above file to remove all existing development data.

In production environments, we use PostgreSQL and use database migrations to modify the schema. If you have a PostgreSQL database, you can create and/or migrate your database by setting NODE_ENV=production and DATABASE_URL=postgresql://your-postgres-connection-url and running:

$ npx knex --cwd db migrate:latest

Set Up and Run Postgres and Localstack

In development Harmony uses Localstack to avoid allocating AWS resources. Postgres is also installed (but not used by default).

$ ./bin/start-postgres-localstack

This will install Postgres and Localstack and forward their ports to localhost. It will take a few minutes the first time you run it. You will know when it has completed when it prints

Localstack has started at http://localhost:4566/
Postgres has started at localhost:5432

To use Postgres instead of sqlite set NODE_ENV=production in your .env and run NODE_ENV=production DATABASE_URL=postgresql://postgres:password@localhost:5432 npx knex --cwd db migrate:latest to create the latest schema.

Add A Service

Clone the Harmony service example repository into a peer directory of the main Harmony repo

$ cd ..
$ git clone https://github.com/nasa/harmony-service-example.git

(minikube only) From the harmony-service-example project root, run

eval $(minikube docker-env)

This will set up the proper environment for building the image so that it may be used in minikube.

Next run the following command to build and locally install the image:

./bin/build-image

This may take some time, but ultimately it will produce a local docker image tagged harmonyservices/service-example:latest. (The docker images for each service must be available locally in order for the k8s deployment to succeed.)

Create the k8s deployment:

./bin/deploy-services

If you'd like to build and test a new service for Harmony see this reference.

Deleting services and stopping Kubernetes

To delete all resources associated with deployed services, postgres and localstack deployment, run:

$ kubectl delete namespaces harmony

minikube users can stop Kubernetes by running minikube stop. Docker Desktop users will need to close Docker or disable Kubernetes support in the UI. Note that the latter uninstalls kubectl.

Run Harmony

To run Harmony locally such that it reloads when files change (recommended during development), run

$ npm run start-dev

In production, we use $ npm run start which does the same but does not add the file watching and reloading behavior.

You should see messages about the two applications listening on two ports, "frontend" and "backend." The frontend application receives requests from users, while the backend application receives callbacks from services.

Connect A Client

You should now be able to view the outputs of performing a simple transformation request. Harmony has its own test collection set up for sanity checking harmony with the harmony-service-example backend. This will fetch a granule from that collection converted to GeoTIFF: http://localhost:3000/C1233800302-EEDTEST/ogc-api-coverages/1.0.0/collections/all/coverage/rangeset?granuleId=G1233800343-EEDTEST

You can also set up a WMS connection in QGIS, for example, by placing the http://localhost:3000/C1233800302-EEDTEST/wms as the "URL" field input in the "Connection Details" dialog when adding a new WMS connection. Thereafter, expanding the connection should provide a list of layers obtained through a GetCapabilities call to the test server, and double-clicking a layer should add it to a map, making a WMS call to retrieve an appropriate PNG from the test server.

Run Tests

To run the linter, tests, and coverage checks as the CI environment will, run

$ npm test

Harmony uses eslint as a linter, which can be invoked as $ npx eslint (or $ eslint if you have set up your PATH). It uses mocha for tests, $ npx mocha, and nyc for code coverage, $ npx nyc mocha.

Test Fixtures

Rather than repeatedly perform the same queries against the CMR, our test suite uses node-replay to record and play back HTTP interactions. All non-localhost interactions are recorded and placed in files in the fixtures directory.

By default, the test suite will playback interactions it has already seen and record any new interactions to new files. This behavior can be changed by setting the REPLAY environment variable, as described in the node-replay README.

To re-record everything, remove the fixtures directory and run the test suite. This should be done to cull the recordings when a code change makes many of them obsolete, when CMR adds response fields that Harmony needs to make use of, and periodically to ensure no impactful CMR changes or regressions.

Building and Publishing the Harmony Docker Image

The Harmony Docker image can be built with the following command:

npm run build

The image can be deployed to DockerHub using the following commands:

npm run publish

Contributing to Harmony

We welcome Pull Requests from developers not on the Harmony team. Please follow the standard "Fork and Pull Request" workflow shown below.

Submitting a Pull Request

If you are a developer on another team and would like to submit a Pull Request to this repo:

  1. Create a fork of the harmony repository.
  2. When ready, submit a PR from the fork's branch back to the harmony master branch. Ideally name the PR with a Jira ticket name (e.g., HARMONY-314).
  3. The PR's 'build' tab should not show errors.

Additional Resources