rename minion model-path to model-dir

BioWilko · BioWilko · commit 76bb8f984ef1 · 2024-11-12T10:33:27.000Z
diff --git a/artic/pipeline.py b/artic/pipeline.py
@@ -74,7 +74,7 @@ def init_pipeline_parser():
         help="The model to use for clair3, if not provided the pipeline will try to figure it out the appropriate model from the read fastq",
     )
     parser_minion.add_argument(
-        "--model-path",
+        "--model-dir",
         metavar="model_path",
         help="Path containing clair3 models, defaults to models packaged with conda installation (default: $CONDA_PREFIX/bin/models/)",
         type=str,

Original file line number	Diff line number	Diff line change
`@@ -74,7 +74,7 @@ def init_pipeline_parser():`
`74`	`74`	`help="The model to use for clair3, if not provided the pipeline will try to figure it out the appropriate model from the read fastq",`
`75`	`75`	`)`
`76`	`76`	`parser_minion.add_argument(`
`77`		`- "--model-path",`
	`77`	`+ "--model-dir",`
`78`	`78`	`metavar="model_path",`
`79`	`79`	`help="Path containing clair3 models, defaults to models packaged with conda installation (default: $CONDA_PREFIX/bin/models/)",`
`80`	`80`	`type=str,`