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README.Rmd
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README.Rmd
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---
output: rmarkdown::github_document
---
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "",
fig.path = "inst/extdata/"
)
```
## `viabilitymetrics`: Seed Viability Calculations and Curve Fitting <img src="https://raw.githubusercontent.com/aravind-j/viabilitymetrics/master/inst/extdata/viabilitymetrics.png" align="right" alt="logo" width="173" height = "200" style = "padding: 10px; border: none; float: right;">
```{r,echo = FALSE, message = FALSE}
devtools::load_all(".")
```
###### Version : [`r getNamespaceVersion("viabilitymetrics")`](https://aravind-j.github.io/viabilitymetrics/articles/Introduction.html#version-history); Copyright (C) 2017-2018: [ICAR-NBPGR](http://www.nbpgr.ernet.in/); License: [GPL2|GPL-3](https://www.r-project.org/Licenses/)
##### *Aravind, J., Radhamani, J., Vimala Devi, S., Jacob, S. R., and Kalyani Srinivasan*
ICAR-National Bureau of Plant Genetic Resources, New Delhi
***
[](https://cran.r-project.org/)
[](https://www.gnu.org/licenses/gpl-3.0)
[](https://cran.r-project.org/package=viabilitymetrics)
<!-- [](https://CRAN.R-project.org/package=viabilitymetrics) -->
<!-- [](https://github.com/aravind-j/viabilitymetrics) -->
```{r, results='asis', echo=FALSE}
dver <- ifelse(test = gsub("(.\\.)(\\d+)(\\..)", "", getNamespaceVersion("viabilitymetrics")) != "",
yes = getNamespaceVersion("viabilitymetrics"),
no = gsub("Version:\\s*", "", readLines(paste0("https://raw.githubusercontent.com/", "aravind-j/viabilitymetrics", "/master/DESCRIPTION"))[grep("Version:", readLines(paste0("https://raw.githubusercontent.com/", "aravind-j/viabilitymetrics", "/master/DESCRIPTION")))]))
cat(paste("[![develVersion](https://img.shields.io/badge/devel%20version-", dver, "-orange.svg)](https://github.com/aravind-j/viabilitymetrics)", sep = ""))
```
<!-- [] -->
[](https://www.repostatus.org/#wip)
[](https://lifecycle.r-lib.org/articles/stages.html#maturing)
[)`-yellowgreen.svg)](/commits/master)
<!-- [](https://www.rdocumentation.org/packages/viabilitymetrics) -->
<!-- [](https://doi.org/10.5281/zenodo.841963) -->
[](https://github.com/aravind-j/google-analytics-beacon)
***
## Description
<!-- `r gsub("(<doi:)(.*?)(>)", "[\\1\\2\\3](https://doi.org/\\2)", gsub("\\n", " ", packageDescription("viabilitymetrics", fields = "Description")))` -->
`r pkgdown:::linkify(packageDescription("viabilitymetrics", fields = "Description"))`
## Installation
### Install development version from Github
```{r, eval=FALSE}
devtools::install_github("aravind-j/viabilitymetrics")
```
## Detailed tutorial
For a detailed tutorial on how to used this package type:
```{r, eval=FALSE}
browseVignettes(package = 'viabilitymetrics')
```
The vignette for the latest version is also available [online](https://aravind-j.github.io/viabilitymetrics/articles/Introduction.html).
## What's new
To know whats new in this version type:
```{r, eval=FALSE}
news(package='viabilitymetrics')
```
## Links
<!-- [CRAN page](https://cran.r-project.org/package=viabilitymetrics) -->
[Github page](https://github.com/aravind-j/viabilitymetrics)
[Documentation website](https://aravind-j.github.io/viabilitymetrics/)
<!-- [Zenodo DOI](https://doi.org/10.5281/zenodo.841963) -->
## Citing `viabilitymetrics`
To cite the methods in the package use:
```{r, eval = FALSE}
citation("viabilitymetrics")
```
```{r, echo = FALSE}
detach("package:viabilitymetrics", unload=TRUE)
suppressPackageStartupMessages(library(viabilitymetrics))
cit <- citation("viabilitymetrics")
# yr <- format(Sys.Date(), "%Y")
# cit[1]$year <- yr
# oc <- class(cit)
#
# cit <- unclass(cit)
# attr(cit[[1]],"textVersion") <- gsub("\\(\\)",
# paste("\\(", yr, "\\)", sep = ""),
# attr(cit[[1]],"textVersion"))
# class(cit) <- oc
cit
```