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The R package PGRdup was developed as a tool to aid genebank managers in the identification of probable duplicate accessions from plant genetic resources (PGR) passport databases.
PGRdup Packagevignettes/Introduction.Rmd
Introduction.Rmd
phonetics# Return the primary and secondary Double Metaphone encodings for a character vector. diff --git a/docs/reference/KWCounts-2.png b/docs/reference/KWCounts-2.png deleted file mode 100644 index 48e8e1b..0000000 Binary files a/docs/reference/KWCounts-2.png and /dev/null differ diff --git a/docs/reference/KWCounts-3.png b/docs/reference/KWCounts-3.png deleted file mode 100644 index 48e8e1b..0000000 Binary files a/docs/reference/KWCounts-3.png and /dev/null differ diff --git a/vignettes/Introduction.pdf b/vignettes/Introduction.pdf index 508df12..d9e333a 100644 Binary files a/vignettes/Introduction.pdf and b/vignettes/Introduction.pdf differ diff --git a/vignettes/Introduction.tex b/vignettes/Introduction.tex index 14226f2..47a4b33 100644 --- a/vignettes/Introduction.tex +++ b/vignettes/Introduction.tex @@ -123,7 +123,7 @@ \author{Aravind, J.\textsuperscript{1}, Radhamani, J.\textsuperscript{1}, Kalyani Srinivasan\textsuperscript{1}, Ananda Subhash, B.\textsuperscript{2}, and Tyagi, R. K.\textsuperscript{1}} -\date{2020-02-04} +\date{2020-02-08} \begin{document} \maketitle @@ -2445,29 +2445,30 @@ \subsection{Session Info}\label{session-info}} [5] diagram_1.6.4 shape_1.4.4 loaded via a namespace (and not attached): - [1] Rcpp_1.0.3 stringdist_0.9.5.5 prettyunits_1.1.1 - [4] ps_1.3.0 assertthat_0.2.1 rprojroot_1.3-2 - [7] digest_0.6.23 packrat_0.5.0 R6_2.4.1 -[10] backports_1.1.5 evaluate_0.14 highr_0.8 -[13] httr_1.4.1 ggplot2_3.2.1 pillar_1.4.3 -[16] rlang_0.4.3 curl_4.3 lazyeval_0.2.2 -[19] rstudioapi_0.10 data.table_1.12.8 callr_3.4.1 -[22] rmarkdown_2.1 labeling_0.3 desc_1.2.0 -[25] devtools_2.2.1 stringr_1.4.0 igraph_1.2.4.2 -[28] RCurl_1.95-4.12 munsell_0.5.0 compiler_4.0.0 -[31] xfun_0.12 microbenchmark_1.4-7 pkgconfig_2.0.3 -[34] pkgbuild_1.0.6 htmltools_0.4.0 tidyselect_0.2.5 -[37] tibble_2.1.3 roxygen2_7.0.2 XML_3.99-0.3 -[40] fansi_0.4.1 crayon_1.3.4 dplyr_0.8.3 -[43] withr_2.1.2 bitops_1.0-6 grid_4.0.0 -[46] gtable_0.3.0 lifecycle_0.1.0 magrittr_1.5 -[49] scales_1.1.0 cli_2.0.1 stringi_1.4.5 -[52] farver_2.0.3 fs_1.3.1 remotes_2.1.0 -[55] testthat_2.3.1 xml2_1.2.2 ellipsis_0.3.0 -[58] tools_4.0.0 glue_1.3.1 purrr_0.3.3 -[61] processx_3.4.1 pkgload_1.0.2 parallel_4.0.0 -[64] yaml_2.2.0 colorspace_1.4-1 sessioninfo_1.1.1 -[67] memoise_1.1.0 knitr_1.27 usethis_1.5.1 + [1] httr_1.4.1 pkgload_1.0.2 microbenchmark_1.4-7 + [4] assertthat_0.2.1 highr_0.8 yaml_2.2.0 + [7] remotes_2.1.0 sessioninfo_1.1.1 pillar_1.4.3 +[10] backports_1.1.5 glue_1.3.1 digest_0.6.23 +[13] colorspace_1.4-1 htmltools_0.4.0 XML_3.99-0.3 +[16] pkgconfig_2.0.3 devtools_2.2.1 rcmdcheck_1.3.3 +[19] purrr_0.3.3 scales_1.1.0 processx_3.4.1 +[22] stringdist_0.9.5.5 tibble_2.1.3 farver_2.0.3 +[25] ggplot2_3.2.1 usethis_1.5.1 ellipsis_0.3.0 +[28] withr_2.1.2 lazyeval_0.2.2 cli_2.0.1 +[31] magrittr_1.5 crayon_1.3.4 memoise_1.1.0 +[34] evaluate_0.14 ps_1.3.0 fs_1.3.1 +[37] fansi_0.4.1 xml2_1.2.2 pkgbuild_1.0.6 +[40] tools_4.0.0 data.table_1.12.8 prettyunits_1.1.1 +[43] lifecycle_0.1.0 stringr_1.4.0 xopen_1.0.0 +[46] munsell_0.5.0 callr_3.4.1 packrat_0.5.0 +[49] compiler_4.0.0 tinytex_0.19.2 rlang_0.4.3 +[52] grid_4.0.0 RCurl_1.95-4.12 rstudioapi_0.10 +[55] igraph_1.2.4.2 bitops_1.0-6 labeling_0.3 +[58] rmarkdown_2.1 testthat_2.3.1 gtable_0.3.0 +[61] roxygen2_7.0.2 curl_4.3 R6_2.4.1 +[64] knitr_1.28 dplyr_0.8.3 rprojroot_1.3-2 +[67] desc_1.2.0 stringi_1.4.5 parallel_4.0.0 +[70] Rcpp_1.0.3 tidyselect_0.2.5 xfun_0.12 \end{verbatim} \hypertarget{references}{%