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No prediction generated #24
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Hi there, I am not sure where the max_length comes from or if this works properly yet, but the training data has a longer than 1000 amino acid sequence, while the max_length was set to 700. So my best guess is that this method should work for at least any sequence < 1000 amino acids. My code now looks like this:
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Dear Prof.
I tried to do a prediction on a protein sequence. I succeed in PSSM computing and conversion to tfrecord. But when I put the resultant .tfrecord file to one of the model directory RGN7/data/ProteinNet7Thinning90/testing/ and run the model, protling.py didn't give any prediction in the RGN7/runs/CASP7/ProteinNet7Thinning90/5/outputsTesting/ directory nor through any error messages. I tried to put several files in RGN7/data/ProteinNet7Thinning90/validation to RGN7/data/ProteinNet7Thinning90/testing/. This time, protling.py generated expected files.
I cannot figure out what's the problem. Can you please help me. Thanks!
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