Field not found in source schema

[rohitanil]

Query engine

Spark

Question

I am using a REST catalog, minio and spark iceberg on docker to read from Kafka topic, make some transformations and write it out as iceberg tables. I am able to print the transformed data to the console but throws an error when I write to Iceberg. I can see metadata in minio

from pyspark.sql import SparkSession
from pyspark.sql.functions import col, from_json, min, max, avg, window
from pyspark.sql.types import StructField, StructType, DoubleType, StringType, TimestampType

if __name__ == "__main__":
    spark = SparkSession.builder.appName("Kafka-Iceberg-Stream-Processor").getOrCreate()
    spark.sparkContext.setLogLevel("ERROR")

    schema = StructType([
        StructField("BTC_EUR", DoubleType(), True),
        StructField("BTC_INR", DoubleType(), True),
        StructField("BTC_USD", DoubleType(), True),
        StructField("ETH_EUR", DoubleType(), True),
        StructField("ETH_INR", DoubleType(), True),
        StructField("ETH_USD", DoubleType(), True),
        StructField("timestamp", TimestampType(), True)
    ])

    kafka_df = spark.readStream \
        .format("kafka") \
        .option("kafka.bootstrap.servers", "192.168.1.16:9092") \
        .option("subscribe", "crypto") \
        .option("startingOffsets", "earliest") \
        .load()

    parsed_df = kafka_df.selectExpr(
        "CAST(value AS STRING) AS value",
        "timestamp"
    ).withColumn("parsed_json", from_json(col("value"), schema)) \
        .select(
        col("parsed_json.BTC_EUR").alias("BTC_EUR"),
        col("parsed_json.BTC_INR").alias("BTC_INR"),
        col("parsed_json.BTC_USD").alias("BTC_USD"),
        col("parsed_json.ETH_EUR").alias("ETH_EUR"),
        col("parsed_json.ETH_INR").alias("ETH_INR"),
        col("parsed_json.ETH_USD").alias("ETH_USD"),
        col("parsed_json.timestamp").alias("event_time"),
        col("timestamp").alias("processing_time")
    )

    windowed_df = parsed_df \
        .withWatermark("event_time", "1 minute") \
        .groupBy(window(col("event_time"), "5 minutes", "5 minutes")) \
        .agg(
        max("BTC_EUR").alias("max_BTC_EUR"),
        min("BTC_EUR").alias("min_BTC_EUR"),
        avg("BTC_EUR").alias("avg_BTC_EUR"),
        max("BTC_INR").alias("max_BTC_INR"),
        min("BTC_INR").alias("min_BTC_INR"),
        avg("BTC_INR").alias("avg_BTC_INR"),
        max("BTC_USD").alias("max_BTC_USD"),
        min("BTC_USD").alias("min_BTC_USD"),
        avg("BTC_USD").alias("avg_BTC_USD"),
        max("ETH_EUR").alias("max_ETH_EUR"),
        min("ETH_EUR").alias("min_ETH_EUR"),
        avg("ETH_EUR").alias("avg_ETH_EUR"),
        max("ETH_INR").alias("max_ETH_INR"),
        min("ETH_INR").alias("min_ETH_INR"),
        avg("ETH_INR").alias("avg_ETH_INR"),
        max("ETH_USD").alias("max_ETH_USD"),
        min("ETH_USD").alias("min_ETH_USD"),
        avg("ETH_USD").alias("avg_ETH_USD")
    ).withColumn("window_start", col("window.start")) \
        .withColumn("window_end", col("window.end")) \
        .drop("window") \
        .select("window_start",
                "window_end",
                "max_BTC_EUR",
                "min_BTC_EUR",
                "avg_BTC_EUR",
                "max_BTC_INR",
                "min_BTC_INR",
                "avg_BTC_INR",
                "max_BTC_USD",
                "min_BTC_USD",
                "avg_BTC_USD",
                "max_ETH_EUR",
                "min_ETH_EUR",
                "avg_ETH_EUR",
                "max_ETH_INR",
                "min_ETH_INR",
                "avg_ETH_INR",
                "max_ETH_USD",
                "min_ETH_USD",
                "avg_ETH_USD")

    # Create the table if it doesn't exist
    spark.sql("""
        CREATE TABLE IF NOT EXISTS db.crypto_metrics4 (
            window_start TIMESTAMP,
            window_end TIMESTAMP,
            max_BTC_EUR DOUBLE,
            min_BTC_EUR DOUBLE,
            avg_BTC_EUR DOUBLE,
            max_BTC_INR DOUBLE,
            min_BTC_INR DOUBLE,
            avg_BTC_INR DOUBLE,
            max_BTC_USD DOUBLE,
            min_BTC_USD DOUBLE,
            avg_BTC_USD DOUBLE,
            max_ETH_EUR DOUBLE,
            min_ETH_EUR DOUBLE,
            avg_ETH_EUR DOUBLE,
            max_ETH_INR DOUBLE,
            min_ETH_INR DOUBLE,
            avg_ETH_INR DOUBLE,
            max_ETH_USD DOUBLE,
            min_ETH_USD DOUBLE,
            avg_ETH_USD DOUBLE
        ) USING iceberg
    """)

    print(spark.sql("SHOW TABLES IN rest.db").show())
    print(windowed_df.printSchema())
    # Write stream data to Iceberg
    query = windowed_df.writeStream \
        .outputMode("complete") \
        .format("iceberg") \
        .option("path", "s3://warehouse/crypto_metrics4") \
        .option("checkpointLocation", "/tmp/spark/checkpoints/crypto_metrics4") \
        .trigger(processingTime="1 minute") \
        .start()

    query.awaitTermination()

And I am submitting the spark job along with configurations as follows

spark-submit \
    --packages org.apache.iceberg:iceberg-spark-runtime-3.5_2.12:1.7.1,org.apache.spark:spark-sql-kafka-0-10_2.12:3.5.4 \
    --conf spark.sql.extensions=org.apache.iceberg.spark.extensions.IcebergSparkSessionExtensions \
    --conf spark.sql.catalog.rest=org.apache.iceberg.spark.SparkCatalog \
    --conf spark.sql.catalog.rest.type=rest \
    --conf spark.sql.catalog.rest.uri=http://rest:8181 \
    --conf spark.sql.catalog.rest=org.apache.iceberg.spark.SparkCatalog \
    --conf spark.sql.catalog.rest.warehouse=s3://warehouse \
    --conf spark.sql.defaultCatalog=rest \
    test.py

Error

py4j.protocol.Py4JJavaError: An error occurred while calling o181.start.
: org.apache.iceberg.exceptions.RuntimeIOException: Failed to get file system for path: s3://warehouse/crypto_metrics4/metadata/version-hint.text
        at org.apache.iceberg.hadoop.Util.getFs(Util.java:58)
        at org.apache.iceberg.hadoop.HadoopTableOperations.getFileSystem(HadoopTableOperations.java:412)
        at org.apache.iceberg.hadoop.HadoopTableOperations.findVersion(HadoopTableOperations.java:315)
        at org.apache.iceberg.hadoop.HadoopTableOperations.refresh(HadoopTableOperations.java:104)
        at org.apache.iceberg.hadoop.HadoopTableOperations.current(HadoopTableOperations.java:84)
        at org.apache.iceberg.hadoop.HadoopTables.load(HadoopTables.java:94)
        at org.apache.iceberg.spark.SparkCatalog.loadFromPathIdentifier(SparkCatalog.java:972)
        at org.apache.iceberg.spark.SparkCatalog.load(SparkCatalog.java:839)
        at org.apache.iceberg.spark.SparkCatalog.loadTable(SparkCatalog.java:170)
        at org.apache.iceberg.spark.source.IcebergSource.getTable(IcebergSource.java:107)
        at org.apache.iceberg.spark.source.IcebergSource.inferPartitioning(IcebergSource.java:90)
        at org.apache.spark.sql.execution.datasources.v2.DataSourceV2Utils$.getTableFromProvider(DataSourceV2Utils.scala:82)
        at org.apache.spark.sql.streaming.DataStreamWriter.startInternal(DataStreamWriter.scala:399)
        at org.apache.spark.sql.streaming.DataStreamWriter.start(DataStreamWriter.scala:251)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.base/java.lang.reflect.Method.invoke(Method.java:566)
        at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
        at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:374)
        at py4j.Gateway.invoke(Gateway.java:282)
        at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
        at py4j.commands.CallCommand.execute(CallCommand.java:79)
        at py4j.ClientServerConnection.waitForCommands(ClientServerConnection.java:182)
        at py4j.ClientServerConnection.run(ClientServerConnection.java:106)
        at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: org.apache.hadoop.fs.UnsupportedFileSystemException: No FileSystem for scheme "s3"
        at org.apache.hadoop.fs.FileSystem.getFileSystemClass(FileSystem.java:3443)
        at org.apache.hadoop.fs.FileSystem.createFileSystem(FileSystem.java:3466)
        at org.apache.hadoop.fs.FileSystem.access$300(FileSystem.java:174)
        at org.apache.hadoop.fs.FileSystem$Cache.getInternal(FileSystem.java:3574)
        at org.apache.hadoop.fs.FileSystem$Cache.get(FileSystem.java:3521)
        at org.apache.hadoop.fs.FileSystem.get(FileSystem.java:540)
        at org.apache.hadoop.fs.Path.getFileSystem(Path.java:365)
        at org.apache.iceberg.hadoop.Util.getFs(Util.java:56)
        ... 25 more

What am I possibly doing wrong?

[stym06]

This is possibly due to hadoop-aws module not available in classpath that contains hdfs Implementation classes.

you can import https://mvnrepository.com/artifact/org.apache.hadoop/hadoop-aws/3.4.1